Factsheet for TraesCS2D01G182500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G201500.1	Wheat	plasma membrane	92.97	92.16
TraesCS2A01G175100.1	Wheat	extracellular	90.55	90.95
HORVU2Hr1G033070.14	Barley	mitochondrion	83.08	80.43
EER97506	Sorghum	extracellular, plasma membrane	72.75	72.27
Os07t0604300-01	Rice	extracellular	69.23	70.63
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	69.01	68.26
KRH72178	Soybean	mitochondrion	54.07	66.67
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	66.59	66.45
VIT_14s0083g01160.t01	Wine grape	vacuole	63.3	66.06
PGSC0003DMT400003470	Potato	extracellular	64.84	66.0
Solyc02g089120.2.1	Tomato	extracellular	64.84	66.0
TraesCS4D01G082700.1	Wheat	extracellular	66.37	65.51
Solyc02g065770.2.1	Tomato	extracellular	63.3	64.86
KRH54735	Soybean	endoplasmic reticulum	64.4	64.25
CDX86358	Canola	extracellular	61.54	64.22
Bra025406.1-P	Field mustard	extracellular	61.54	64.22
PGSC0003DMT400068328	Potato	extracellular	62.64	64.19
TraesCS6D01G364400.1	Wheat	extracellular	62.86	63.98
KRH45084	Soybean	extracellular, golgi, plasma membrane	62.86	63.84
KRH01360	Soybean	extracellular, golgi, plasma membrane	62.86	63.84
KRH03165	Soybean	extracellular	63.52	63.66
CDX85277	Canola	extracellular	60.88	63.53
KRH63181	Soybean	endoplasmic reticulum	63.52	63.38
CDY70289	Canola	extracellular	54.29	62.22
Bra040587.1-P	Field mustard	extracellular	58.9	61.05
AT3G29810.1	Thale cress	extracellular	58.9	60.77
KRH18352	Soybean	plasma membrane	61.1	60.7
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.88	60.61
KRG93684	Soybean	extracellular, vacuole	60.44	60.57
AT3G02210.1	Thale cress	extracellular	59.78	60.18
AT5G60920.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	60.22	60.09
CDX87193	Canola	plasma membrane	60.22	60.09
CDY16831	Canola	plasma membrane	60.44	60.04
Bra039163.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	59.78	59.78
CDY43250	Canola	plasma membrane	59.78	59.52
Bra035951.1-P	Field mustard	plasma membrane	59.78	59.39
CDY02184	Canola	plasma membrane	59.56	59.3
CDY60470	Canola	plasma membrane	59.56	59.17
CDY58691	Canola	plasma membrane	59.56	59.17
Bra012996.1-P	Field mustard	plasma membrane	59.34	59.08
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	15.6	57.72
CDY42842	Canola	cytosol	15.38	57.38
TraesCS5D01G107900.1	Wheat	extracellular	56.04	56.79
TraesCS3D01G404800.2	Wheat	plasma membrane	55.82	55.58
TraesCS2D01G182400.1	Wheat	plasma membrane	53.19	54.14
TraesCS3D01G047900.1	Wheat	plastid	29.01	53.01
CDY24004	Canola	cytosol, nucleus, plastid	9.67	51.76
TraesCS5D01G402000.1	Wheat	extracellular	25.49	50.88
KRH56778	Soybean	extracellular	22.64	49.28
CDY29033	Canola	cytosol	19.56	48.9
TraesCS2D01G386400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.93	47.29
CDY14723	Canola	cytosol	24.62	35.22
TraesCS7D01G136500.1	Wheat	mitochondrion	27.47	18.55
TraesCS4D01G188600.1	Wheat	golgi	25.71	17.38
TraesCS2D01G092100.1	Wheat	plasma membrane	24.84	17.12

Protein Annotations

EnsemblPlants:TraesCS2D01G182500.1	EnsemblPlantsGene:TraesCS2D01G182500	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF7	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
SignalP:SignalP-noTM	MapMan:21.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:126971396..126974690

Molecular Weight (calculated)

50535.0 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.238

Length

455 amino acids

Sequence
(BLAST)

001: MAAAAPLRPL RASIALLLLA LALSALVPSS DAYDSLDPVG NITIKWDVKK WSHDGYVATV SLYNYQQYRH IQAPGWKLGW VWAGKEIIWK MSGAQTTEQG
101: DCSRFREEPP PHCCRTDPEV VDFLPGAAYS KQTPNCCKGG VLSSWGQDPA NAIATFDVTV GQAGTSNSSV KAPTNFTLKA PGPGYTCGPA KEVEPTKFID
201: KDGDGRRTTQ AIKTWNVTCT YSQFGAGRSP TCCVVLSSFY NSTIVDCNKC SCGCQDNSTN PVSCIKPNSP YLASVVPGDS TNIPVPLVQC SPHMCPIRVH
301: WHVKANYKEY WRVKITATNL NYLMNYSQWN LVAQHPNFNN LTTIFSFRYK DLNPYGTIND TGMMWGIKYY NDLLMTAQHN GNVQSELLFR KDPATFTFQK
401: GWAFPRRVYF NGENCVMPPP DAYPWLPNDS HRLSASLTIP FITVWAALAF FLVHV

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.