Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 87.77 | 87.39 |
| Os07t0604300-01 | Rice | extracellular | 83.41 | 85.65 |
| KRH72178 | Soybean | mitochondrion | 62.23 | 77.24 |
| OQU92393 | Sorghum | extracellular | 77.51 | 77.01 |
| Solyc02g089120.2.1 | Tomato | extracellular | 73.58 | 75.39 |
| PGSC0003DMT400003470 | Potato | extracellular | 73.36 | 75.17 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 71.4 | 75.0 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 72.93 | 73.73 |
| KRH54735 | Soybean | endoplasmic reticulum | 73.14 | 73.46 |
| TraesCS3A01G409900.1 | Wheat | plastid | 44.32 | 73.29 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 71.4 | 72.99 |
| Solyc02g065770.2.1 | Tomato | extracellular | 70.74 | 72.97 |
| KRH63181 | Soybean | endoplasmic reticulum | 72.49 | 72.81 |
| TraesCS2D01G182500.1 | Wheat | golgi | 72.27 | 72.75 |
| KRH03165 | Soybean | extracellular | 72.05 | 72.69 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 72.27 | 72.59 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 70.74 | 72.32 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 72.05 | 71.9 |
| PGSC0003DMT400068328 | Potato | extracellular | 69.65 | 71.85 |
| Bra025406.1-P | Field mustard | extracellular | 68.34 | 71.79 |
| CDX86358 | Canola | extracellular | 68.34 | 71.79 |
| CDX85277 | Canola | extracellular | 68.12 | 71.56 |
| KRH18352 | Soybean | plasma membrane | 70.96 | 70.96 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 69.43 | 70.82 |
| KRG93684 | Soybean | extracellular, vacuole | 70.09 | 70.7 |
| CDY70289 | Canola | extracellular | 60.7 | 70.03 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 71.4 | 69.57 |
| EER90859 | Sorghum | extracellular | 63.97 | 68.94 |
| AT3G29810.1 | Thale cress | extracellular | 66.38 | 68.93 |
| AT3G02210.1 | Thale cress | extracellular | 67.25 | 68.14 |
| Bra040587.1-P | Field mustard | extracellular | 65.28 | 68.11 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 67.03 | 67.47 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 67.03 | 67.32 |
| CDY60470 | Canola | plasma membrane | 67.03 | 67.03 |
| CDY43250 | Canola | plasma membrane | 66.81 | 66.96 |
| CDY02184 | Canola | plasma membrane | 66.81 | 66.96 |
| Bra012996.1-P | Field mustard | plasma membrane | 66.59 | 66.74 |
| CDX87193 | Canola | plasma membrane | 66.38 | 66.67 |
| CDY16831 | Canola | plasma membrane | 66.59 | 66.59 |
| CDY58691 | Canola | plasma membrane | 66.38 | 66.38 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 60.26 | 66.03 |
| Bra035951.1-P | Field mustard | plasma membrane | 65.94 | 65.94 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 67.69 | 65.68 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 11.79 | 63.53 |
| EER94687 | Sorghum | extracellular | 61.35 | 63.0 |
| EER99679 | Sorghum | plasma membrane | 61.35 | 63.0 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 62.45 | 62.58 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 16.59 | 61.79 |
| CDY42842 | Canola | cytosol | 16.38 | 61.48 |
| KRH56778 | Soybean | extracellular | 26.42 | 57.89 |
| CDY29033 | Canola | cytosol | 22.49 | 56.59 |
| KXG26803 | Sorghum | extracellular, plasma membrane | 47.82 | 48.99 |
| CDY14723 | Canola | cytosol | 27.07 | 38.99 |
| EER95000 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 27.73 | 18.96 |
| KXG36369 | Sorghum | mitochondrion | 26.42 | 17.98 |
| OQU90545 | Sorghum | extracellular, plasma membrane, vacuole | 25.33 | 17.55 |
Protein Annotations
| MapMan:21.1.2.2 | EntrezGene:8079018 | UniProt:C5XDW0 | InterPro:COBRA_pln | EnsemblPlants:EER97506 | ProteinID:EER97506 |
| ProteinID:EER97506.1 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | PFAM:PD140986 | PFAM:PF04833 |
| PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF7 | EnsemblPlantsGene:SORBI_3002G368100 | unigene:Sbi.20301 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0001A838AE | RefSeq:XP_002460985.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:72786586..72790678
Molecular Weight (calculated)
50995.0 Da
IEP (calculated)
8.711
GRAVY (calculated)
-0.163
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPRPALLL PAVRFASTTI ALLLLVAFSS LMRSSDAYDP LDPNGNITIK WDVIQWTSDG YVAVVSLYNY QQYRHIQAPG WKLGWVWAKK EVIWAMTGGQ
101: ATEQGDCSKF KTNIPHCCRK DPEVVDLLPG TPYNMQIANC CKGGVLTSWA QDPSNAVASF QVSVGQAGTT NRTVKVPKNF TLKAPGPGYT CGTAKLVTPT
201: KFISPDGRRS TQAHMTWNVT CTYSQFLAQR SPSCCVSLSS FYNDTIVNCP TCSCGCQNNS TAPGSCVEGN SPYLASVVND PNKNSLAPLV QCTSHMCPIR
301: VHWHVKVNYK EYWRVKITVT NFNYRMNYSQ WNLVAQHPNF DNLTTIFSFN YKPLNPYGVI NDTAMLWGIK YYNDLLMTAG PDGNVQSELL FRKEPSTFTF
401: QKGWAFPRRV YFNGDNCVMP PPDAYPWLPN ASPRLSASLL LPFVAAWTAF AILLMTHP
101: ATEQGDCSKF KTNIPHCCRK DPEVVDLLPG TPYNMQIANC CKGGVLTSWA QDPSNAVASF QVSVGQAGTT NRTVKVPKNF TLKAPGPGYT CGTAKLVTPT
201: KFISPDGRRS TQAHMTWNVT CTYSQFLAQR SPSCCVSLSS FYNDTIVNCP TCSCGCQNNS TAPGSCVEGN SPYLASVVND PNKNSLAPLV QCTSHMCPIR
301: VHWHVKVNYK EYWRVKITVT NFNYRMNYSQ WNLVAQHPNF DNLTTIFSFN YKPLNPYGVI NDTAMLWGIK YYNDLLMTAG PDGNVQSELL FRKEPSTFTF
401: QKGWAFPRRV YFNGDNCVMP PPDAYPWLPN ASPRLSASLL LPFVAAWTAF AILLMTHP
001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL
Arabidopsis Description
COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.