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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 7
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 4
  • golgi 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02184 Canola plasma membrane 99.78 99.78
CDY58691 Canola plasma membrane 98.91 98.69
Bra035951.1-P Field mustard plasma membrane 93.87 93.67
AT5G60920.1 Thale cress endoplasmic reticulum, plasma membrane, plastid 93.44 93.64
Bra029346.1-P Field mustard cytosol, plasma membrane, plastid 24.29 90.24
VIT_17s0000g05070.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 74.62 74.78
PGSC0003DMT400068328 Potato extracellular 72.65 74.77
Solyc02g089120.2.1 Tomato extracellular 73.09 74.72
Solyc02g065770.2.1 Tomato extracellular 72.43 74.55
PGSC0003DMT400003470 Potato extracellular 72.87 74.5
KRH54735 Soybean endoplasmic reticulum 74.18 74.34
KRH63181 Soybean endoplasmic reticulum 73.96 74.12
KRH03165 Soybean extracellular 72.65 73.13
Bra025406.1-P Field mustard extracellular 69.58 72.94
GSMUA_Achr4P01440_001 Banana extracellular, plasma membrane 72.87 72.87
GSMUA_Achr1P24500_001 Banana endoplasmic reticulum, plasma membrane, vacuole 72.87 72.71
Zm00001d031479_P001 Maize cytosol, mitochondrion 26.04 72.56
Os03t0754500-00 Rice extracellular 32.82 70.09
Bra040587.1-P Field mustard extracellular 66.96 69.7
Bra039163.1-P Field mustard endoplasmic reticulum, plasma membrane, plastid 68.71 69.01
Os07t0604300-01 Rice extracellular 67.18 68.83
Os05t0386800-01 Rice extracellular 68.71 68.71
Zm00001d013256_P001 Maize extracellular 66.96 68.15
EER90860 Sorghum extracellular, golgi, plasma membrane 66.74 67.93
GSMUA_Achr2P06240_001 Banana mitochondrion 70.24 67.3
Zm00001d034049_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 66.52 67.26
EER97506 Sorghum extracellular, plasma membrane 66.74 66.59
TraesCS6D01G364400.1 Wheat extracellular 64.55 66.0
TraesCS6A01G379800.1 Wheat extracellular 63.9 65.32
Bra023528.1-P Field mustard extracellular, plasma membrane, vacuole 61.93 65.21
TraesCS6B01G418400.1 Wheat extracellular 63.68 65.1
TraesCS5D01G401900.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 64.99 64.99
TraesCS5A01G392000.1 Wheat endoplasmic reticulum, extracellular, golgi 64.99 64.99
TraesCS5B01G396900.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 64.99 64.99
EER90859 Sorghum extracellular 60.18 64.71
Bra008684.1-P Field mustard extracellular 54.27 64.08
OQU92393 Sorghum extracellular 64.55 63.99
Zm00001d022081_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 64.33 63.91
HORVU5Hr1G095910.12 Barley extracellular, vacuole 63.9 63.48
Os03t0416300-01 Rice extracellular 63.02 62.88
Bra012993.1-P Field mustard endoplasmic reticulum, extracellular 28.23 62.62
TraesCS3A01G409900.1 Wheat plastid 37.2 61.37
TraesCS4A01G231200.1 Wheat extracellular 61.71 61.3
TraesCS4D01G082700.1 Wheat extracellular 61.71 61.17
Bra035948.1-P Field mustard cytosol 12.91 60.82
HORVU4Hr1G014530.1 Barley extracellular 61.49 60.69
TraesCS4B01G084800.1 Wheat extracellular 60.39 60.66
TraesCS2A01G175100.1 Wheat extracellular 59.74 60.26
TraesCS2D01G182500.1 Wheat golgi 59.08 59.34
KRH56778 Soybean extracellular 26.7 58.37
Os10t0497700-01 Rice extracellular 54.27 58.35
HORVU2Hr1G033070.14 Barley mitochondrion 59.96 58.3
TraesCS2B01G201500.1 Wheat plasma membrane 58.21 57.95
TraesCS3B01G443000.1 Wheat cytosol, plasma membrane, vacuole 51.64 56.46
TraesCS5D01G402000.1 Wheat extracellular 28.01 56.14
HORVU5Hr1G067940.1 Barley plasma membrane, plastid 57.33 55.51
TraesCS5B01G397000.2 Wheat extracellular 27.57 55.51
HORVU5Hr1G096010.13 Barley endoplasmic reticulum 32.82 53.76
TraesCS3D01G404800.2 Wheat plasma membrane 52.95 52.95
Bra030800.1-P Field mustard cytosol 45.51 49.88
Bra019992.1-P Field mustard cytosol 42.01 48.36
Bra035768.1-P Field mustard mitochondrion, peroxisome, plastid 18.82 22.63
Bra033528.1-P Field mustard plasma membrane 26.91 18.66
Bra020151.1-P Field mustard cytosol 10.5 18.53
Bra036147.1-P Field mustard plasma membrane 26.7 18.43
Bra026378.1-P Field mustard extracellular, golgi, vacuole 25.6 17.92
Bra021208.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.82 17.69
Bra001795.1-P Field mustard endoplasmic reticulum, vacuole 25.82 17.66
Bra023941.1-P Field mustard plasma membrane 25.82 17.56
Bra010411.1-P Field mustard endoplasmic reticulum, golgi, vacuole 24.73 17.04
Protein Annotations
MapMan:21.1.2.2EnsemblPlantsGene:Bra012996EnsemblPlants:Bra012996.1EnsemblPlants:Bra012996.1-PInterPro:COBRA_plnGO:GO:0005575
GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020GO:GO:0016021GO:GO:0016043
GO:GO:0016049GO:GO:0031225GO:GO:0040007UniProt:M4D936PFAM:PD140986PFAM:PF04833
PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF3TMHMM:TMhelixUniParc:UPI00025404A1SEG:seg
Description
AT5G60920 (E=1e-255) COB | COB (COBRA)
Coordinates
chrA03:-:21148602..21150795
Molecular Weight (calculated)
51082.2 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.142
Length
457 amino acids
Sequence
(BLAST)
001: MESFISRSTS IVSKMSFLAV GIVFLVSSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIPSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNLPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVLNSWVQ DPGTAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTQ
201: FVTPDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNKT ESGACLDPDT PHLASVVSPP TKKGTILPPL VQCTRHLCPI
301: RVHWHVKQNY KEYWRVKITI TTFNYRLNYS QWNMVAQHPN LDNITQIFSF NYKSLSPYAG LNDTAMLWGM KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDAYPFLP NGGFRTEFSV FSAVLLPVLL VFFLFSA
Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.