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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER90860 Sorghum extracellular, golgi, plasma membrane 84.71 80.18
VIT_14s0083g01160.t01 Wine grape vacuole 69.88 68.12
KRH72178 Soybean mitochondrion 58.82 67.75
Os10t0497700-01 Rice extracellular 66.59 66.59
VIT_17s0000g05070.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 71.29 66.45
Solyc02g065770.2.1 Tomato extracellular 69.18 66.22
GSMUA_Achr4P01440_001 Banana extracellular, plasma membrane 71.06 66.08
PGSC0003DMT400068328 Potato extracellular 68.71 65.77
GSMUA_Achr1P24500_001 Banana endoplasmic reticulum, plasma membrane, vacuole 70.82 65.72
Solyc02g089120.2.1 Tomato extracellular 68.94 65.55
PGSC0003DMT400003470 Potato extracellular 68.47 65.1
KRH01360 Soybean extracellular, golgi, plasma membrane 68.47 64.96
KRH45084 Soybean extracellular, golgi, plasma membrane 68.0 64.51
KRH63181 Soybean endoplasmic reticulum 68.94 64.25
CDY70289 Canola extracellular 59.76 63.98
EER97506 Sorghum extracellular, plasma membrane 68.94 63.97
KRH54735 Soybean endoplasmic reticulum 68.47 63.82
Bra025406.1-P Field mustard extracellular 65.41 63.76
CDX86358 Canola extracellular 65.41 63.76
GSMUA_Achr2P06240_001 Banana mitochondrion 71.06 63.31
CDX85277 Canola extracellular 64.94 63.3
KRG93684 Soybean extracellular, vacuole 67.53 63.22
KRH03165 Soybean extracellular 67.06 62.78
AT3G29810.1 Thale cress extracellular 64.24 61.9
CDX87193 Canola plasma membrane 66.35 61.84
CDY16831 Canola plasma membrane 66.59 61.79
AT5G60920.1 Thale cress endoplasmic reticulum, plasma membrane, plastid 66.12 61.62
KRH18352 Soybean plasma membrane 66.35 61.57
Bra035951.1-P Field mustard plasma membrane 65.88 61.14
AT3G02210.1 Thale cress extracellular 64.71 60.84
Bra040587.1-P Field mustard extracellular 62.82 60.82
CDY58691 Canola plasma membrane 65.41 60.7
CDY02184 Canola plasma membrane 64.94 60.39
OQU92393 Sorghum extracellular 65.41 60.3
Bra039163.1-P Field mustard endoplasmic reticulum, plasma membrane, plastid 64.47 60.22
Bra012996.1-P Field mustard plasma membrane 64.71 60.18
CDY60470 Canola plasma membrane 64.71 60.04
CDY24004 Canola cytosol, nucleus, plastid 12.0 60.0
CDY43250 Canola plasma membrane 64.24 59.74
EER94687 Sorghum extracellular 61.41 58.52
EER99679 Sorghum plasma membrane 59.76 56.95
CDY42842 Canola cytosol 16.0 55.74
KRH56778 Soybean extracellular 27.29 55.5
Bra029346.1-P Field mustard cytosol, plasma membrane, plastid 15.53 53.66
CDY29033 Canola cytosol 22.59 52.75
KXG26803 Sorghum extracellular, plasma membrane 46.12 43.85
CDY14723 Canola cytosol 27.29 36.48
EER95000 Sorghum endoplasmic reticulum, extracellular, plasma membrane 29.41 18.66
OQU90545 Sorghum extracellular, plasma membrane, vacuole 28.71 18.46
KXG36369 Sorghum mitochondrion 28.71 18.13
Protein Annotations
MapMan:21.1.2.2EntrezGene:8086228ProteinID:AAO17705.1InterPro:COBRA_plnEnsemblPlants:EER90859ProteinID:EER90859
ProteinID:EER90859.1GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020
GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007PFAM:PD140986PFAM:PF04833
PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF3UniProt:Q84KI5EnsemblPlantsGene:SORBI_3001G086000unigene:Sbi.20307
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0000190A0CRefSeq:XP_002463861.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:6659857..6663478
Molecular Weight (calculated)
46835.0 Da
IEP (calculated)
8.553
GRAVY (calculated)
-0.227
Length
425 amino acids
Sequence
(BLAST)
001: MATGGRLAVT CSAAVLLAVA LLISAPDAAE AYDSLDPNGN ITIKWDVMQW TPDGYVAVVT MYNYQQFRHI GPPGWQLGWT WAKKEVIWSM VGAQATEQGD
101: CSKFKGNIPH SCKKDPVIVD LLPSTPYDMQ IANCCKAGVI STISQDPANA ASSFQLSVGL SGSTTKTVKV PKNFTLRTPG PGYTCGRAIV GKPTIFFSAD
201: GRRATKALMT WNVTCTYSQF LAQKTPSCCV SLSSFYNNTT VNCPTCSCGC QNPSGSNCVN KGSPRLRSAI DGPGKWSGEP LVECTSHMCP VKINWHVKQN
301: SKDYWRVKIT ITNLNFRMNY SEWNLVVQHP NFDNITQLFG LNYKPLTPYG GDINDTAMFW GVKSYNDVLM QDGKLGMVQS ELLLRKDSRT FTFEKGWAFP
401: RRVYFNGDNC VMPAPENYPS LPMQA
Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.