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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022082_P001 Maize extracellular, plasma membrane, vacuole 95.07 94.85
TraesCS2D01G182400.1 Wheat plasma membrane 81.84 81.66
Os07t0604400-00 Rice extracellular 82.29 81.37
TraesCS2A01G175000.1 Wheat plasma membrane 81.61 81.07
TraesCS2B01G201400.1 Wheat plasma membrane 81.17 80.8
EER94687 Sorghum extracellular 74.66 74.66
PGSC0003DMT400082702 Potato extracellular 41.48 74.6
HORVU2Hr1G033060.13 Barley mitochondrion 74.66 74.5
AT5G15630.1 Thale cress extracellular, plasma membrane, vacuole 69.28 71.69
GSMUA_Achr4P03210_001 Banana endoplasmic reticulum, extracellular, plasma membrane 71.75 71.59
VIT_14s0083g01150.t01 Wine grape plasma membrane 69.06 71.46
KRG93686 Soybean extracellular, plasma membrane, vacuole 69.06 71.46
Bra023528.1-P Field mustard extracellular, plasma membrane, vacuole 69.28 71.2
Solyc03g070440.2.1 Tomato extracellular 68.39 70.77
KRH45086 Soybean plasma membrane 68.39 70.77
KRH01361 Soybean extracellular, plasma membrane, vacuole 68.39 70.77
PGSC0003DMT400002674 Potato plasma membrane 68.61 70.51
GSMUA_Achr4P14440_001 Banana plasma membrane 72.2 70.31
PGSC0003DMT400003723 Potato extracellular 68.39 70.28
Solyc02g089130.2.1 Tomato extracellular 67.94 69.82
Bra008684.1-P Field mustard extracellular 60.31 69.51
HORVU0Hr1G004650.3 Barley mitochondrion 63.9 68.67
HORVU2Hr1G033080.1 Barley extracellular 28.03 67.93
Solyc03g114900.2.1 Tomato extracellular 67.04 66.89
KRH18350 Soybean cytosol 26.23 65.73
PGSC0003DMT400063055 Potato extracellular, mitochondrion 66.59 65.27
EER90860 Sorghum extracellular, golgi, plasma membrane 63.45 63.03
EER97506 Sorghum extracellular, plasma membrane 63.0 61.35
EER90859 Sorghum extracellular 56.95 59.76
KRH54737 Soybean plasma membrane 60.99 59.39
KRH63180 Soybean plasma membrane 60.76 59.17
OQU92393 Sorghum extracellular 58.97 57.05
VIT_17s0000g05050.t01 Wine grape cytosol 7.62 56.67
Bra012993.1-P Field mustard endoplasmic reticulum, extracellular 25.56 55.34
AT5G60950.1 Thale cress endoplasmic reticulum 23.99 52.45
CDY26445 Canola cytosol 19.06 50.3
Solyc02g064790.1.1 Tomato extracellular, vacuole 7.4 47.83
KXG26803 Sorghum extracellular, plasma membrane 46.41 46.31
VIT_17s0000g05060.t01 Wine grape plasma membrane 68.83 32.98
EER95000 Sorghum endoplasmic reticulum, extracellular, plasma membrane 28.92 19.25
OQU90545 Sorghum extracellular, plasma membrane, vacuole 27.58 18.61
KXG36369 Sorghum mitochondrion 27.13 17.98
Protein Annotations
MapMan:21.1.2.2EntrezGene:8079020UniProt:C5XDW2InterPro:COBRA_plnEnsemblPlants:EER99679ProteinID:EER99679
ProteinID:EER99679.1GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007PFAM:PD140986
PFAM:PF04833PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF20EnsemblPlantsGene:SORBI_3002G368300unigene:Sbi.8057
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A83D1BRefSeq:XP_002463158.1SEG:seg:
Description
hypothetical protein
Coordinates
chr2:-:72793782..72796955
Molecular Weight (calculated)
49258.2 Da
IEP (calculated)
8.505
GRAVY (calculated)
-0.079
Length
446 amino acids
Sequence
(BLAST)
001: MEPRCFVLVL ALAAALSVAV AYDPLDPNGN ITIKWDIMSW TPDGYVAVVT INNFQMYRQI MAPGWTVGWT WAKREVIWSM VGAQATEQGD CSRFKANIPH
101: CCKRTPTVVD LLPGVPYNQQ IANCCRGGVI SAYGQDPASA VAAFQVSVGQ AGTTNRTVKV PKNFTLLGPG PGYTCGPGKI VPSTVFLTPD RRRKTQALMT
201: WNVTCTYSQH LASKYPSCCV SFSSFYNDTI VPCAKCACGC EHKTCVQGDS KRLAVTGKHE HAHAAAARGH RDKEAPLLQC TTHMCPVRVH WHVKLNYKEY
301: WRAKIAITNF NYHMNYTQWT LVAQHPNLDN ITEVFSFDYK PVVAYGSIND TAMFYGLKYF NDHLMQAGPY GNVQSEVLMR KDASTFTFRQ GWAFPRKVYF
401: NGDECQMPPP DEYPYLPNSA LPAAAASSSL GAAVAAVVVL LVMIVA
Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.