Factsheet for Zm00001d022082_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99679	Sorghum	plasma membrane	94.85	95.07
TraesCS2D01G182400.1	Wheat	plasma membrane	82.55	82.55
TraesCS2A01G175000.1	Wheat	plasma membrane	82.1	81.74
Os07t0604400-00	Rice	extracellular	82.33	81.6
TraesCS2B01G201400.1	Wheat	plasma membrane	81.66	81.47
HORVU2Hr1G033060.13	Barley	mitochondrion	74.72	74.72
Zm00001d047276_P001	Maize	plasma membrane	74.27	73.78
PGSC0003DMT400082702	Potato	extracellular	40.27	72.58
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	72.04	72.04
VIT_14s0083g01150.t01	Wine grape	plasma membrane	68.23	70.77
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	68.23	70.77
KRG93686	Soybean	extracellular, plasma membrane, vacuole	68.23	70.77
GSMUA_Achr4P14440_001	Banana	plasma membrane	72.48	70.74
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	68.46	70.51
KRH45086	Soybean	plasma membrane	67.79	70.3
KRH01361	Soybean	extracellular, plasma membrane, vacuole	67.56	70.07
Solyc03g070440.2.1	Tomato	extracellular	66.89	69.37
HORVU0Hr1G004650.3	Barley	mitochondrion	64.21	69.16
PGSC0003DMT400002674	Potato	plasma membrane	67.11	69.12
HORVU2Hr1G033080.1	Barley	extracellular	28.41	69.02
Bra008684.1-P	Field mustard	extracellular	59.51	68.73
PGSC0003DMT400003723	Potato	extracellular	66.67	68.66
Solyc02g089130.2.1	Tomato	extracellular	66.0	67.97
Solyc03g114900.2.1	Tomato	extracellular	66.0	66.0
KRH18350	Soybean	cytosol	26.17	65.73
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	65.55	64.4
Zm00001d031479_P001	Maize	cytosol, mitochondrion	23.49	64.02
Zm00001d013256_P001	Maize	extracellular	63.53	63.25
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	63.09	62.39
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	61.97	60.22
KRH63180	Soybean	plasma membrane	60.4	58.95
KRH54737	Soybean	plasma membrane	60.4	58.95
VIT_17s0000g05050.t01	Wine grape	cytosol	7.61	56.67
Bra012993.1-P	Field mustard	endoplasmic reticulum, extracellular	25.28	54.85
AT5G60950.1	Thale cress	endoplasmic reticulum	23.71	51.96
CDY26445	Canola	cytosol	18.79	49.7
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	45.64	46.79
Solyc02g064790.1.1	Tomato	extracellular, vacuole	7.16	46.38
VIT_17s0000g05060.t01	Wine grape	plasma membrane	67.79	32.55
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	28.19	19.27
Zm00001d028826_P001	Maize	plasma membrane	28.64	19.19
Zm00001d021661_P001	Maize	mitochondrion	26.62	17.55

Protein Annotations

EntrezGene:100037800	MapMan:21.1.2.2	UniProt:A1DZD8	EMBL:BT086136	InterPro:COBRA_pln	EMBL:EF078702
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	ProteinID:ONM59468.1	PFAM:PD140986
PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF20	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0000EA27D6	EnsemblPlantsGene:Zm00001d022082	EnsemblPlants:Zm00001d022082_P001	EnsemblPlants:Zm00001d022082_T001	SEG:seg	:

Description

COBRA-like protein 4

Coordinates

chr7:-:169730585..169732890

Molecular Weight (calculated)

49048.8 Da

IEP (calculated)

8.876

GRAVY (calculated)

-0.104

Length

447 amino acids

Sequence
(BLAST)

001: MEPRRSVLLL ALAVAAALSV AVAYDPLDPN GNITIKWDIM SWTPDGYVAV VTINNFQTYR QITAPGWTVG WTWAKREVIW SMVGAQATEQ GDCSRFKANI
101: PHCCKRTPAV VDLLPGVPYN QQIANCCRGG VVSAYGQDPA TAVAAFQVSV GQAGTTNRTV KVPKNFTLLG PGPGYTCGPG KVVPSTVFLT PDRRRKTQAL
201: MTWNVTCTYS QHLASKYPSC CVSFSSFYND TIVPCAKCAC GCEHKTCVQG DSKRLAVTGK HAHTAAAVRG QHRDKEAPLL QCTTHMCPVR VHWHVKLNYK
301: EYWRAKIAIT NFNYHMNYTQ WTLVAQHPNL DNITEVFSFG YKPVVSYGSI NDTAMFYGLK YFNDHLMQAG PYGNVQSEVL MRKDASTFTF RQGWAFPRKV
401: YFNGDECQMP PPDAYPYLPN SAPPTAAASL GGAAAAAVVV LLGMIVA

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.