Factsheet for Zm00001d028826_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95000	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	94.45	94.03
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	87.71	87.18
TraesCS4B01G187300.1	Wheat	golgi	84.71	84.71
TraesCS4D01G188600.1	Wheat	golgi	85.46	84.7
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	85.46	84.7
HORVU4Hr1G054770.1	Barley	plastid	85.61	72.28
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	63.87	65.14
GSMUA_Achr11P...	Banana	plasma membrane	59.97	59.17
GSMUA_AchrUn_...	Banana	plasma membrane	58.62	58.62
PGSC0003DMT400065836	Potato	cytosol	40.33	57.36
KRH50776	Soybean	endoplasmic reticulum, vacuole	53.37	55.37
KRH02312	Soybean	endoplasmic reticulum, extracellular	53.37	55.28
VIT_05s0077g01470.t01	Wine grape	plasma membrane	53.22	54.53
Bra033528.1-P	Field mustard	plasma membrane	52.47	53.11
CDY34424	Canola	plasma membrane	52.32	52.96
CDY32210	Canola	plasma membrane	52.32	52.88
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	50.97	52.23
Solyc01g065530.2.1	Tomato	nucleus, plastid	50.52	52.01
AT4G16120.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	50.97	51.44
KRH37033	Soybean	extracellular	50.08	51.38
VIT_07s0005g01020.t01	Wine grape	plasma membrane	48.58	50.08
AT3G16860.1	Thale cress	plasma membrane	48.88	49.92
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	49.03	49.17
CDY49611	Canola	plasma membrane	48.73	49.09
CDY00037	Canola	plasma membrane	48.58	48.94
Bra036147.1-P	Field mustard	plasma membrane	48.58	48.94
Solyc09g075540.1.1	Tomato	plasma membrane	47.83	48.93
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.58	48.58
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	48.43	48.43
AT5G49270.1	Thale cress	extracellular, plasma membrane, vacuole	48.13	48.42
GSMUA_Achr8P10390_001	Banana	cytosol	17.69	47.2
Zm00001d021661_P001	Maize	mitochondrion	47.53	46.76
Zm00001d031479_P001	Maize	cytosol, mitochondrion	7.5	30.49
Zm00001d013256_P001	Maize	extracellular	19.34	28.73
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	19.19	28.64
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	19.34	28.54
Zm00001d047276_P001	Maize	plasma membrane	18.29	27.11
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.59	26.96
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	16.64	25.46

Protein Annotations

MapMan:21.1.2.2	ProteinID:AAQ81633.1	InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225
GO:GO:0040007	ProteinID:ONL97156.1	PFAM:PD140986	PFAM:PF04833	PANTHER:PTHR31052	PANTHER:PTHR31052:SF10
UniProt:Q5YLM2	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00004470CC	EnsemblPlantsGene:Zm00001d028826	EnsemblPlants:Zm00001d028826_P001
EnsemblPlants:Zm00001d028826_T001	SEG:seg	:	:	:	:

Description

roothair defective3COBRA-like protein 7

Coordinates

chr1:+:47787874..47789877

Molecular Weight (calculated)

71381.1 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.012

Length

667 amino acids

Sequence
(BLAST)

001: MAGSVAPHAV VLGLLLLAGL AAAQRATTPA AAAPAPDPGC NGIQLTYNFV DRTKIRPFVS DKNKQPYAFR ANVTVLNSGT RPLKSWAALV TFGYGEILVG
101: VDGAVLTGGG DLPYNTTEDA GNATSFSGYP HTDLLTPIAT AGDLSQIQAS VGIVGTLFAG PGPFVPLPTA LSLDDPAYAC PAATNVTARV LSTCCVLTPE
201: AEANATAIDA NTTDPTKDFL PRGTGDLVIT YDVLQAYPSS YLALVTLENN AKLGRLDNWR LSWEWRRGEF IYSMKGAHPS EVDTSGCICG APGQYYQSLD
301: FSQVLNCDRK PVILDLPLSR YNDTQIGKID NCCRNGTILP KSMDEAQSKS AFQMQVFKMP PDLNRTKLFP PANFKIVGAS SLNPDYACGQ PVPVSPTAFP
401: DPSGLDSTTL AVATWQVVCN ITTTKGAKPK CCVTFSAYYN DSVIPCSTCA CGCPANRRGP TCSTTAQSML LPPEALLVPF DNRSQKALAW AELKHYNVPR
501: PMPCGDFCGV SINWHVSTDY NKGWSARVTL FNWEDVDMAN WFAAIVMDKA YDGFEKAYSF NGTAVGKNTI FMQGLEGLNY LVKQTNMSGS DYLVPGKQQS
601: VLSFTKKLTP GLNVVAGDGF PTKVFFNGDE CAMPQRIPIS TGFSTRLSSG LALVPFLVAS AFLLLQQ

Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)

001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A

Arabidopsis Description

COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.