Factsheet for Zm00001d013256_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90860	Sorghum	extracellular, golgi, plasma membrane	97.33	97.33
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	95.77	95.13
Zm00001d031479_P001	Maize	cytosol, mitochondrion	33.63	92.07
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	84.86	83.37
TraesCS5B01G396900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	84.63	83.15
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	84.41	82.93
TraesCS6D01G364400.1	Wheat	extracellular	81.29	81.66
TraesCS6A01G379800.1	Wheat	extracellular	80.4	80.76
TraesCS6B01G418400.1	Wheat	extracellular	79.96	80.31
HORVU5Hr1G095910.12	Barley	extracellular, vacuole	78.4	76.52
VIT_14s0083g01160.t01	Wine grape	vacuole	73.5	75.69
VIT_17s0000g05070.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	75.95	74.78
Solyc02g065770.2.1	Tomato	extracellular	73.5	74.32
GSMUA_Achr4P01440_001	Banana	extracellular, plasma membrane	75.5	74.18
PGSC0003DMT400068328	Potato	extracellular	73.05	73.87
GSMUA_Achr1P24500_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	75.28	73.8
PGSC0003DMT400003470	Potato	extracellular	72.83	73.15
Solyc02g089120.2.1	Tomato	extracellular	72.38	72.71
KRH72178	Soybean	mitochondrion	59.47	72.36
KRH63181	Soybean	endoplasmic reticulum	73.05	71.93
KRH01360	Soybean	extracellular, golgi, plasma membrane	71.71	71.88
KRH54735	Soybean	endoplasmic reticulum	72.61	71.49
KRH45084	Soybean	extracellular, golgi, plasma membrane	70.82	70.98
Bra025406.1-P	Field mustard	extracellular	68.82	70.87
CDX86358	Canola	extracellular	68.82	70.87
CDX85277	Canola	extracellular	68.37	70.41
CDY70289	Canola	extracellular	62.14	70.28
GSMUA_Achr2P06240_001	Banana	mitochondrion	74.61	70.23
KRH03165	Soybean	extracellular	70.82	70.04
KRG93684	Soybean	extracellular, vacuole	70.38	69.6
AT5G60920.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	69.93	68.86
AT3G29810.1	Thale cress	extracellular	67.48	68.71
Bra040587.1-P	Field mustard	extracellular	67.04	68.56
CDX87193	Canola	plasma membrane	69.49	68.42
CDY16831	Canola	plasma membrane	69.49	68.12
TraesCS5D01G402000.1	Wheat	extracellular	34.3	67.54
Bra035951.1-P	Field mustard	plasma membrane	68.82	67.47
TraesCS5B01G397000.2	Wheat	extracellular	34.08	67.4
KRH18352	Soybean	plasma membrane	68.6	67.25
CDY58691	Canola	plasma membrane	68.6	67.25
CDY02184	Canola	plasma membrane	68.37	67.18
Bra012996.1-P	Field mustard	plasma membrane	68.15	66.96
Os10t0497700-01	Rice	extracellular	63.25	66.82
HORVU5Hr1G096010.13	Barley	endoplasmic reticulum	41.43	66.67
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	67.48	65.87
AT3G02210.1	Thale cress	extracellular	66.15	65.71
Bra039163.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	65.92	65.05
CDY60470	Canola	plasma membrane	66.15	64.85
CDY43250	Canola	plasma membrane	65.7	64.55
Zm00001d047276_P001	Maize	plasma membrane	63.7	63.56
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	63.25	63.53
CDY42842	Canola	cytosol	17.15	63.11
CDY24004	Canola	cytosol, nucleus, plastid	11.8	62.35
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	16.7	60.98
KRH56778	Soybean	extracellular	27.39	58.85
CDY29033	Canola	cytosol	22.72	56.04
Zm00001d002803_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	47.22	48.62
CDY14723	Canola	cytosol	27.84	39.31
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	28.29	19.42
Zm00001d028826_P001	Maize	plasma membrane	28.73	19.34
Zm00001d021661_P001	Maize	mitochondrion	27.39	18.14

Protein Annotations

EntrezGene:100037798	MapMan:21.1.2.2	UniProt:A1DZD5	ProteinID:AQK62780.1	InterPro:COBRA_pln	EMBL:EF078699
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	PFAM:PD140986	PFAM:PF04833
PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0000EA2911
EnsemblPlantsGene:Zm00001d013256	EnsemblPlants:Zm00001d013256_P001	EnsemblPlants:Zm00001d013256_T001	SEG:seg	:	:

Description

Brittle stalk-2-like protein 4

Coordinates

chr5:+:7181062..7184784

Molecular Weight (calculated)

49843.8 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.137

Length

449 amino acids

Sequence
(BLAST)

001: MAAGGRSIAC FAAVLLAAAL LLSAPTTTEA YDSLDPNGNI TIKWDIMQWT PDGYVAVVTM FNYQQFRHIG APGWQLGWTW AKKEVIWSMV GAQTTEQGDC
101: SKFKGNTPHC CKKDPTIVDL LPGTPYNMQI ANCCKAGVIN TFNQDPANAA SSFQISVGLA GTTNKTVKVP KNFTLKTPGP GYTCGRAIVG RPTKFFSADG
201: RRVTQALMTW NVTCTYSQFL AQKTPSCCVS LSSFYNDTIV NCPTCSCGCQ NPSGSNCVNE DSPNLQAAID GPGKWTGQPL VQCTSHMCPI RIHWHVKLNY
301: KEYWRVKITI TNFNFRMNYT QWNLVAQHPN FDNITQLFSF NYKPLTPYGG GINDTAMFWG VKFYNDLLMQ AGKLGNVQSE LLLRKDSRTF TFEKGWAFPR
401: RVYFNGDNCV MPSPENYPWL PNASPLTKQA LTLPLLIFWV ALAVLLAYA

Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)

001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

Arabidopsis Description

COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.