Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 6
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 86.47 | 82.68 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 84.17 | 80.31 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 83.03 | 79.04 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 27.75 | 73.78 |
| Os05t0386800-01 | Rice | extracellular | 77.29 | 73.74 |
| Zm00001d013256_P001 | Maize | extracellular | 75.69 | 73.5 |
| Os07t0604300-01 | Rice | extracellular | 75.0 | 73.32 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 75.23 | 73.05 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 79.82 | 72.96 |
| Os03t0754500-00 | Rice | extracellular | 35.78 | 72.9 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 74.77 | 72.12 |
| EER97506 | Sorghum | extracellular, plasma membrane | 75.0 | 71.4 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 72.25 | 70.47 |
| EER90859 | Sorghum | extracellular | 68.12 | 69.88 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 73.17 | 69.8 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 73.17 | 69.8 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 73.17 | 69.8 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 71.33 | 69.57 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 71.33 | 69.57 |
| Os03t0416300-01 | Rice | extracellular | 72.94 | 69.43 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 73.17 | 69.35 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 72.25 | 68.48 |
| OQU92393 | Sorghum | extracellular | 71.79 | 67.9 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 65.83 | 66.59 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 67.89 | 65.05 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 68.58 | 65.0 |
| TraesCS3A01G409900.1 | Wheat | plastid | 41.28 | 64.98 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 68.35 | 64.64 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 68.58 | 64.58 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 66.97 | 64.46 |
| TraesCS2D01G182500.1 | Wheat | golgi | 66.06 | 63.3 |
| Os10t0497700-01 | Rice | extracellular | 61.24 | 62.82 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 65.14 | 61.87 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 65.6 | 60.85 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 58.03 | 60.53 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 63.99 | 59.11 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 30.28 | 57.89 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 30.05 | 57.71 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 36.24 | 56.63 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 58.72 | 56.02 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 51.38 | 51.97 |
| VIT_17s0000g05050.t01 | Wine grape | cytosol | 6.42 | 46.67 |
| VIT_03s0038g01430.t01 | Wine grape | mitochondrion | 17.2 | 45.45 |
| VIT_03s0038g01420.t01 | Wine grape | extracellular, plasma membrane | 25.46 | 44.4 |
| VIT_17s0000g05060.t01 | Wine grape | plasma membrane | 65.6 | 30.72 |
| VIT_05s0077g01470.t01 | Wine grape | plasma membrane | 27.52 | 18.43 |
| VIT_07s0005g01020.t01 | Wine grape | plasma membrane | 27.06 | 18.24 |
| VIT_19s0177g00160.t01 | Wine grape | plasma membrane | 26.83 | 17.86 |
| VIT_10s0116g00620.t01 | Wine grape | extracellular | 26.38 | 17.58 |
Protein Annotations
| EntrezGene:100263436 | wikigene:100263436 | MapMan:21.1.2.2 | EMBL:AM468790 | ProteinID:CAN68249 | ProteinID:CAN68249.1 |
| ProteinID:CBI16946 | ProteinID:CBI16946.3 | InterPro:COBRA_pln | UniProt:D7SMP8 | EMBL:FN594955 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | EntrezGene:LOC100263436 | wikigene:LOC100263436 | PFAM:PD140986 |
| PFAM:PF04833 | PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | SignalP:SignalP-noTM | TIGR:TC63642 |
| UniParc:UPI0001BE0CA3 | ArrayExpress:VIT_14s0083g01160 | EnsemblPlantsGene:VIT_14s0083g01160 | EnsemblPlants:VIT_14s0083g01160.t01 | RefSeq:XP_002281199 | RefSeq:XP_002281199.1 |
| SEG:seg | : | : | : | : | : |
Description
COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:D7SMP8]
Coordinates
chr14:-:23527926..23532692
Molecular Weight (calculated)
48866.4 Da
IEP (calculated)
8.502
GRAVY (calculated)
-0.194
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFCLSLISR SISSFCGCTI LLLFLLSCSC FTSTEAYDAL DPNGNITIKW DIMSWTPDGY VAVVTMYNFQ QYRHIQSPGW SLQWTWAKKE VIWSMLGGQT
101: TEQGDCSRFK GNVPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVVSSWVQ DPANAASSFQ VSVGSAGTTN KTVRVPKNFT LKAPGPGYTC GPAKIVKPTR
201: FVTQDGRRVT QALMTWNVTC TYSQFLSQKT PTCCVSLSSF YNDTIVPCPT CTCGCQNNIT QPGSCVEEDS PYLASVVSGS GKNSYTPLVQ CTKHMCPIRV
301: HWHVKLSYKE YWRVKVTITN FNYRMNYTQW NLVVQHPNFD NLTQIFSFNY KSLTPYAAIN DTAMLWGVKF YNDLLVQAGP LGNVQSELLF RKDKSTFTFE
401: KGWAFPRRIY FNGDNCVMPP PDSYPWLPNA TSRTMA
101: TEQGDCSRFK GNVPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVVSSWVQ DPANAASSFQ VSVGSAGTTN KTVRVPKNFT LKAPGPGYTC GPAKIVKPTR
201: FVTQDGRRVT QALMTWNVTC TYSQFLSQKT PTCCVSLSSF YNDTIVPCPT CTCGCQNNIT QPGSCVEEDS PYLASVVSGS GKNSYTPLVQ CTKHMCPIRV
301: HWHVKLSYKE YWRVKVTITN FNYRMNYTQW NLVVQHPNFD NLTQIFSFNY KSLTPYAAIN DTAMLWGVKF YNDLLVQAGP LGNVQSELLF RKDKSTFTFE
401: KGWAFPRRIY FNGDNCVMPP PDSYPWLPNA TSRTMA
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.