Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 87.39 | 87.97 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 87.39 | 87.97 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 87.17 | 87.75 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 29.57 | 82.93 |
| Zm00001d013256_P001 | Maize | extracellular | 76.52 | 78.4 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 76.96 | 78.32 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 75.87 | 77.73 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 68.48 | 72.25 |
| Solyc02g065770.2.1 | Tomato | extracellular | 69.35 | 71.85 |
| KRH72178 | Soybean | mitochondrion | 57.17 | 71.27 |
| PGSC0003DMT400068328 | Potato | extracellular | 68.7 | 71.17 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 70.22 | 70.83 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 42.39 | 69.89 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 69.57 | 69.87 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 69.35 | 69.8 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 67.61 | 69.42 |
| PGSC0003DMT400003470 | Potato | extracellular | 67.39 | 69.35 |
| CDY70289 | Canola | extracellular | 59.57 | 69.02 |
| Solyc02g089120.2.1 | Tomato | extracellular | 66.96 | 68.9 |
| Bra025406.1-P | Field mustard | extracellular | 64.57 | 68.12 |
| CDX86358 | Canola | extracellular | 64.57 | 68.12 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 66.3 | 68.08 |
| CDX85277 | Canola | extracellular | 64.35 | 67.89 |
| KRH54735 | Soybean | endoplasmic reticulum | 66.52 | 67.11 |
| KRH63181 | Soybean | endoplasmic reticulum | 66.52 | 67.11 |
| KRH03165 | Soybean | extracellular | 66.09 | 66.96 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 68.91 | 66.46 |
| KRG93684 | Soybean | extracellular, vacuole | 65.22 | 66.08 |
| Bra040587.1-P | Field mustard | extracellular | 63.04 | 66.06 |
| AT3G29810.1 | Thale cress | extracellular | 62.39 | 65.08 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 64.13 | 64.69 |
| CDX87193 | Canola | plasma membrane | 64.13 | 64.69 |
| KRH18352 | Soybean | plasma membrane | 64.35 | 64.63 |
| CDY16831 | Canola | plasma membrane | 64.35 | 64.63 |
| CDY58691 | Canola | plasma membrane | 63.91 | 64.19 |
| CDY02184 | Canola | plasma membrane | 63.7 | 64.11 |
| Bra035951.1-P | Field mustard | plasma membrane | 63.7 | 63.97 |
| AT3G02210.1 | Thale cress | extracellular | 62.83 | 63.94 |
| Bra012996.1-P | Field mustard | plasma membrane | 63.48 | 63.9 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 61.96 | 62.64 |
| Os10t0497700-01 | Rice | extracellular | 57.83 | 62.59 |
| CDY60470 | Canola | plasma membrane | 62.17 | 62.45 |
| CDY43250 | Canola | plasma membrane | 61.74 | 62.14 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 61.74 | 61.34 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 49.35 | 60.53 |
| CDY42842 | Canola | cytosol | 15.65 | 59.02 |
| HORVU3Hr1G009960.1 | Barley | plastid | 27.61 | 58.26 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 59.13 | 57.87 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 10.65 | 57.65 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 15.22 | 56.91 |
| KRH56778 | Soybean | extracellular | 25.43 | 55.98 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 57.39 | 55.93 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 54.35 | 55.93 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 47.83 | 53.01 |
| CDY29033 | Canola | cytosol | 20.87 | 52.75 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 19.35 | 48.37 |
| CDY14723 | Canola | cytosol | 26.3 | 38.05 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 16.96 | 24.38 |
| HORVU2Hr1G015440.1 | Barley | cytosol | 23.04 | 19.24 |
| HORVU7Hr1G028350.1 | Barley | golgi, mitochondrion, plasma membrane | 25.65 | 17.56 |
| HORVU0Hr1G030030.1 | Barley | extracellular, plasma membrane | 23.91 | 16.64 |
| HORVU4Hr1G054770.1 | Barley | plastid | 26.09 | 15.19 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G095910.12 | EnsemblPlantsGene:HORVU5Hr1G095910 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SignalP:SignalP-noTM |
| UniParc:UPI000B462E1D | UniProt:A0A287SDJ1 | MapMan:21.1.2.2 | : | : | : |
Description
COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287SDJ1]
Coordinates
chrchr5H:+:600011557..600013919
Molecular Weight (calculated)
52055.1 Da
IEP (calculated)
8.959
GRAVY (calculated)
-0.326
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: VYHLLYLVCF HIYVSNICTL CLFVHAEAYD SLDPNGNITI KWDIISWTPD GYVATVTMFN YQQFRHISAP GWQLGWSWAK KEVIWSMVGA QATEQGDCSK
101: FKSAPPHCCK RDPTIVDLLP GTPFNQQIAN CCKAGVIKTF NQDPGNAASS FQISVGLAGT TNKTVKMPKN FTLKAPGPGY TCGRALVGRP TKYYSSDGRR
201: VTQALMSWNV TCTYSQFLAQ KTPTCCVSLS SFYNDTIVNC PTCSCGCQNN ITRPGSCVND NSPYLQSAIN GPGKLTGQPL VQCTSHMCPI RIHWHVKLNY
301: KDYWRVKVTI TNFNYRMNYT DWNLVAQHPN FDNITKLFSF NYKPLTPYGG RINDTAMFWG MKFYNDLLNQ AGPLGNAQSE LLMRKDSETF TFQKGWAFPR
401: RVYFNGDNCV MPSPDDYPWL PSATKRFSEL QVAVRFHDVR GNRSFVHSIP RLHRRDGCRA
101: FKSAPPHCCK RDPTIVDLLP GTPFNQQIAN CCKAGVIKTF NQDPGNAASS FQISVGLAGT TNKTVKMPKN FTLKAPGPGY TCGRALVGRP TKYYSSDGRR
201: VTQALMSWNV TCTYSQFLAQ KTPTCCVSLS SFYNDTIVNC PTCSCGCQNN ITRPGSCVND NSPYLQSAIN GPGKLTGQPL VQCTSHMCPI RIHWHVKLNY
301: KDYWRVKVTI TNFNYRMNYT DWNLVAQHPN FDNITKLFSF NYKPLTPYGG RINDTAMFWG MKFYNDLLNQ AGPLGNAQSE LLMRKDSETF TFQKGWAFPR
401: RVYFNGDNCV MPSPDDYPWL PSATKRFSEL QVAVRFHDVR GNRSFVHSIP RLHRRDGCRA
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.