Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G047200.1 | Wheat | plastid | 55.73 | 90.09 |
| TraesCS3D01G047900.1 | Wheat | plastid | 59.73 | 89.96 |
| HORVU3Hr1G009960.1 | Barley | plastid | 46.93 | 80.73 |
| KRH18350 | Soybean | cytosol | 34.13 | 71.91 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 86.4 | 69.23 |
| Zm00001d047276_P001 | Maize | plasma membrane | 82.67 | 68.89 |
| EER94687 | Sorghum | extracellular | 81.6 | 68.61 |
| VIT_17s0000g05050.t01 | Wine grape | cytosol | 10.13 | 63.33 |
| AT5G15630.1 | Thale cress | extracellular, plasma membrane, vacuole | 67.73 | 58.93 |
| Solyc03g070440.2.1 | Tomato | extracellular | 67.2 | 58.47 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 69.6 | 58.39 |
| PGSC0003DMT400002674 | Potato | plasma membrane | 67.47 | 58.29 |
| KRH45086 | Soybean | plasma membrane | 66.93 | 58.24 |
| PGSC0003DMT400003723 | Potato | extracellular | 67.2 | 58.06 |
| KRH01361 | Soybean | extracellular, plasma membrane, vacuole | 66.67 | 58.0 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 70.67 | 57.86 |
| KRG93686 | Soybean | extracellular, plasma membrane, vacuole | 66.13 | 57.54 |
| Solyc02g089130.2.1 | Tomato | extracellular | 66.13 | 57.14 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 65.6 | 57.08 |
| Bra023528.1-P | Field mustard | extracellular, plasma membrane, vacuole | 65.87 | 56.91 |
| Solyc03g114900.2.1 | Tomato | extracellular | 66.67 | 55.93 |
| Bra008684.1-P | Field mustard | extracellular | 57.6 | 55.81 |
| PGSC0003DMT400063055 | Potato | extracellular, mitochondrion | 66.13 | 54.51 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 26.13 | 53.26 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 62.93 | 52.8 |
| CDY26445 | Canola | cytosol | 23.2 | 51.48 |
| KRH54737 | Soybean | plasma membrane | 60.8 | 49.78 |
| KRH63180 | Soybean | plasma membrane | 60.53 | 49.56 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 60.53 | 49.35 |
| PGSC0003DMT400082702 | Potato | extracellular | 32.27 | 48.79 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 50.93 | 46.02 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 56.53 | 45.79 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 57.33 | 45.74 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 56.53 | 44.92 |
| Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 8.0 | 43.48 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 26.93 | 36.2 |
| Bra012993.1-P | Field mustard | endoplasmic reticulum, extracellular | 19.2 | 34.95 |
| AT5G60950.1 | Thale cress | endoplasmic reticulum | 18.4 | 33.82 |
| VIT_17s0000g05060.t01 | Wine grape | plasma membrane | 67.47 | 27.18 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 16.0 | 18.75 |
| HORVU2Hr1G015440.1 | Barley | cytosol | 22.13 | 15.06 |
| HORVU7Hr1G028350.1 | Barley | golgi, mitochondrion, plasma membrane | 24.0 | 13.39 |
| HORVU0Hr1G030030.1 | Barley | extracellular, plasma membrane | 23.2 | 13.16 |
| HORVU4Hr1G054770.1 | Barley | plastid | 23.73 | 11.27 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G007580.2 | EnsemblPlantsGene:HORVU3Hr1G007580 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF2 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI000B46F196 | UniProt:A0A287K1W8 | MapMan:21.1.2.2 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:18003664..18005443
Molecular Weight (calculated)
41490.9 Da
IEP (calculated)
8.324
GRAVY (calculated)
-0.122
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPNSMLLA LFLAITCSVA AAYDPLDPTG NITIKWDIQS WTPDGYVAMV AMNNYQQYRQ IMAPGWTLGW SWAKKEVIWS IVGAQATEQG DCSKFKGGIP
101: HCCKHTPSVV DLLPGVPYNQ QIAXLMTWTV TCTYSQQLAS RYPTCCVSFS SFYNSTIVPC ARCACGCGAH KSTGGRGGKS HSDGCIAGDS KRALTPGVNT
201: PKKDGAQLLQ CTNHMCPIRV HWHVKLNYKD YWRAKIAVTN FNYRMNYTQW TLVAQHPNLN NVTEVFSFQY KPLLPYGNIN DTGMFYGLKL YNDLLMEAGP
301: FGNVQSEVLM RKDDATFTFG QGWAFPRKIY FNGDECKMPP PDSYPYLPNS APPRSSIITA AASTCLVLLL LLLAA
101: HCCKHTPSVV DLLPGVPYNQ QIAXLMTWTV TCTYSQQLAS RYPTCCVSFS SFYNSTIVPC ARCACGCGAH KSTGGRGGKS HSDGCIAGDS KRALTPGVNT
201: PKKDGAQLLQ CTNHMCPIRV HWHVKLNYKD YWRAKIAVTN FNYRMNYTQW TLVAQHPNLN NVTEVFSFQY KPLLPYGNIN DTGMFYGLKL YNDLLMEAGP
301: FGNVQSEVLM RKDDATFTFG QGWAFPRKIY FNGDECKMPP PDSYPYLPNS APPRSSIITA AASTCLVLLL LLLAA
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.