CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54737	Soybean	plasma membrane	95.41	95.41
KRG93686	Soybean	extracellular, plasma membrane, vacuole	65.28	69.37
KRH18350	Soybean	cytosol	26.64	68.54
KRH45086	Soybean	plasma membrane	64.19	68.21
KRH01361	Soybean	extracellular, plasma membrane, vacuole	63.97	67.98
PGSC0003DMT400003723	Potato	extracellular	64.19	67.74
PGSC0003DMT400002674	Potato	plasma membrane	63.97	67.51
PGSC0003DMT400082702	Potato	extracellular	36.46	67.34
VIT_17s0000g05050.t01	Wine grape	cytosol	8.73	66.67
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	64.19	65.77
KRH72178	Soybean	mitochondrion	50.66	62.87
EER94687	Sorghum	extracellular	59.83	61.44
TraesCS5D01G107900.1	Wheat	extracellular	59.83	61.02
TraesCS5A01G095200.1	Wheat	extracellular	59.83	61.02
TraesCS5B01G101400.1	Wheat	extracellular	59.83	60.89
EER99679	Sorghum	plasma membrane	59.17	60.76
TraesCS2A01G175000.1	Wheat	plasma membrane	59.39	60.58
HORVU3Hr1G007580.2	Barley	extracellular	49.56	60.53
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	58.95	60.4
TraesCS2D01G182400.1	Wheat	plasma membrane	58.73	60.18
GSMUA_Achr4P14440_001	Banana	plasma membrane	60.04	60.04
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	61.14	59.83
TraesCS2B01G201400.1	Wheat	plasma membrane	58.3	59.6
Zm00001d047276_P001	Maize	plasma membrane	58.52	59.56
KRH54735	Soybean	endoplasmic reticulum	58.52	58.77
KRG93684	Soybean	extracellular, vacuole	57.86	58.37
HORVU3Hr1G009960.1	Barley	plastid	27.51	57.8
KRH03165	Soybean	extracellular	57.21	57.71
KRH63181	Soybean	endoplasmic reticulum	57.42	57.68
Os07t0604400-00	Rice	extracellular	56.77	57.65
KRH01360	Soybean	extracellular, golgi, plasma membrane	56.33	57.59
KRH18352	Soybean	plasma membrane	56.77	56.77
KRH45084	Soybean	extracellular, golgi, plasma membrane	55.46	56.7
HORVU2Hr1G033060.13	Barley	mitochondrion	55.02	56.38
TraesCSU01G047200.1	Wheat	plastid	28.38	56.03
TraesCS3D01G047900.1	Wheat	plastid	30.35	55.82
KRH01357	Soybean	nucleus	51.09	55.71
HORVU0Hr1G004650.3	Barley	mitochondrion	46.51	51.33
Solyc02g064790.1.1	Tomato	extracellular, vacuole	7.42	49.28
HORVU2Hr1G033080.1	Barley	extracellular	19.43	48.37
KRH56778	Soybean	extracellular	21.83	47.85
KRH60734	Soybean	plasma membrane	37.55	38.48
KRH51434	Soybean	endoplasmic reticulum, plasma membrane, vacuole	37.12	38.2
KRH77883	Soybean	extracellular, plasma membrane, vacuole	27.29	20.87
KRH27599	Soybean	extracellular	27.95	19.66
KRH02312	Soybean	endoplasmic reticulum, extracellular	27.51	19.57
KRH37033	Soybean	extracellular	27.07	19.08
KRH50776	Soybean	endoplasmic reticulum, vacuole	26.64	18.97
KRH22248	Soybean	golgi, vacuole	27.07	18.62
KRH27088	Soybean	mitochondrion	26.42	18.03

Protein Annotations

EntrezGene:100780434	MapMan:21.1.2.2	UniProt:A0A0R0K8V2	EMBL:ACUP02002638	InterPro:COBRA_pln	EnsemblPlantsGene:GLYMA_04G160000
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlants:KRH63180	ProteinID:KRH63180
ProteinID:KRH63180.1	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF19
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000233A955	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:39655881..39658301

Molecular Weight (calculated)

51546.4 Da

IEP (calculated)

8.878

GRAVY (calculated)

-0.151

Length

458 amino acids

Sequence
(BLAST)

001: MEFVNGKQQP KSTFTCLKLV ALIALYLVLI SPAESFDPLD PTGNVTIRWD IMSWTSDGYL ATVTLFNFQL YRNIMNPGWT LGWTWAKKEI IWAMMGAQAT
101: EQGDCAKFKL KIPHSCKRNP QVVDLLPGAP FNTQFTNCCK GGVLTSWGQN PSGAVSAFQI GVGLSGTSNK TVKLPKNFKL LGPGPGYSCG PAKIVPSTAI
201: LTEDRRRKMQ ALMSWNVTCT YSQFLASKNP SCCVSLSSFY SDKVTGCPPC ACGCQNNDTC VTKDSKILQQ NVTSPHQKSD ITLTPKPLLQ CTHHLCHVRV
301: HWHLKDNYKD YWRVKIAIIN FNYRLNFTDW SLVVQHPNLN NVTQVYSFEY MPLLPYESTN DTGMFYGLKY YNDLLMEAGP KGNVQSEVLM KKDKNTFTLK
401: QGWAFPRRVY FNGDECMLPP PDSYPMLPNS AHKLPTTITL MAAYVVFTLF FHLVVTLF

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.