Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089130.2.1 | Tomato | extracellular | 97.0 | 97.0 |
| PGSC0003DMT400082702 | Potato | extracellular | 49.54 | 86.69 |
| PGSC0003DMT400002674 | Potato | plasma membrane | 85.25 | 85.25 |
| VIT_14s0083g01150.t01 | Wine grape | plasma membrane | 80.88 | 81.44 |
| AT5G15630.1 | Thale cress | extracellular, plasma membrane, vacuole | 78.8 | 79.35 |
| KRH01361 | Soybean | extracellular, plasma membrane, vacuole | 77.65 | 78.19 |
| CDX90983 | Canola | extracellular | 78.34 | 78.16 |
| Bra023528.1-P | Field mustard | extracellular, plasma membrane, vacuole | 78.11 | 78.11 |
| KRG93686 | Soybean | extracellular, plasma membrane, vacuole | 77.42 | 77.96 |
| Bra008684.1-P | Field mustard | extracellular | 69.35 | 77.78 |
| KRH45086 | Soybean | plasma membrane | 76.96 | 77.49 |
| CDX69511 | Canola | plasma membrane | 78.57 | 74.95 |
| KRH18350 | Soybean | cytosol | 30.41 | 74.16 |
| CDX85543 | Canola | extracellular, plasma membrane, vacuole | 77.65 | 73.9 |
| CDY26444 | Canola | plastid | 62.21 | 73.77 |
| PGSC0003DMT400063055 | Potato | extracellular, mitochondrion | 76.5 | 72.97 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 74.65 | 72.48 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 73.04 | 69.21 |
| EER94687 | Sorghum | extracellular | 70.97 | 69.06 |
| TraesCS5A01G095200.1 | Wheat | extracellular | 70.97 | 68.6 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 70.97 | 68.6 |
| TraesCS5B01G101400.1 | Wheat | extracellular | 70.97 | 68.44 |
| EER99679 | Sorghum | plasma membrane | 70.28 | 68.39 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 70.05 | 68.01 |
| Zm00001d047276_P001 | Maize | plasma membrane | 70.51 | 68.0 |
| TraesCS2A01G175000.1 | Wheat | plasma membrane | 70.28 | 67.93 |
| TraesCS2B01G201400.1 | Wheat | plasma membrane | 69.82 | 67.63 |
| HORVU3Hr1G007580.2 | Barley | extracellular | 58.06 | 67.2 |
| Zm00001d022082_P001 | Maize | extracellular, plasma membrane, vacuole | 68.66 | 66.67 |
| Os03t0416200-01 | Rice | extracellular, golgi, plasma membrane | 71.43 | 66.24 |
| PGSC0003DMT400068328 | Potato | extracellular | 67.74 | 66.22 |
| VIT_17s0000g05050.t01 | Wine grape | cytosol | 8.99 | 65.0 |
| PGSC0003DMT400003470 | Potato | extracellular | 66.82 | 64.88 |
| HORVU3Hr1G009960.1 | Barley | plastid | 32.49 | 64.68 |
| Os07t0604400-00 | Rice | extracellular | 67.05 | 64.52 |
| KRH54737 | Soybean | plasma membrane | 67.74 | 64.19 |
| KRH63180 | Soybean | plasma membrane | 67.74 | 64.19 |
| HORVU2Hr1G033060.13 | Barley | mitochondrion | 64.98 | 63.09 |
| TraesCS3D01G047900.1 | Wheat | plastid | 35.25 | 61.45 |
| TraesCSU01G047200.1 | Wheat | plastid | 32.72 | 61.21 |
| PGSC0003DMT400063318 | Potato | cytosol | 56.45 | 60.64 |
| HORVU0Hr1G004650.3 | Barley | mitochondrion | 55.99 | 58.55 |
| Bra012993.1-P | Field mustard | endoplasmic reticulum, extracellular | 26.96 | 56.8 |
| CDY02181 | Canola | endoplasmic reticulum, extracellular | 26.96 | 56.8 |
| CDY58695 | Canola | extracellular | 26.04 | 54.85 |
| AT5G60950.1 | Thale cress | endoplasmic reticulum | 25.12 | 53.43 |
| HORVU2Hr1G033080.1 | Barley | extracellular | 22.58 | 53.26 |
| PGSC0003DMT400004139 | Potato | extracellular | 18.89 | 39.81 |
| CDX70627 | Canola | cytosol, nucleus, plasma membrane | 78.57 | 39.74 |
| CDX87194 | Canola | mitochondrion | 13.59 | 28.23 |
| PGSC0003DMT400065836 | Potato | cytosol | 28.57 | 26.44 |
| PGSC0003DMT400081003 | Potato | cytosol | 6.91 | 25.86 |
| PGSC0003DMT400002688 | Potato | cytosol | 7.14 | 24.03 |
| PGSC0003DMT400002667 | Potato | cytosol, golgi, peroxisome | 8.29 | 23.08 |
| PGSC0003DMT400065840 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 29.72 | 19.82 |
| PGSC0003DMT400037398 | Potato | vacuole | 29.49 | 19.31 |
| PGSC0003DMT400002678 | Potato | vacuole | 28.57 | 18.76 |
| PGSC0003DMT400005270 | Potato | cytosol | 28.8 | 17.46 |
Protein Annotations
| EntrezGene:102604326 | MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| UniProt:M0ZM78 | PFAM:PD140986 | PFAM:PF04833 | EnsemblPlantsGene:PGSC0003DMG400001465 | PGSC:PGSC0003DMG400001465 | EnsemblPlants:PGSC0003DMT400003723 |
| PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF2 | SignalP:SignalP-noTM | UniParc:UPI0002952A3C | RefSeq:XP_006338344.1 |
| SEG:seg | : | : | : | : | : |
Description
Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400001465]
Coordinates
chr2:+:45428396..45431674
Molecular Weight (calculated)
48945.0 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.182
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGLIGVAGF FLIALIPHTV AFDPLDPNGN ITIKWDVMSW TPDGYVATVT MNNFQMYRHI MTPGWTLGWT WAKKEVIWSM VGAQTTEQGD CSKFKGNIPH
101: CCKKNPTVVD LLPGTPYNQQ FTNCCKGGVL ASWGQDPQSS VSAFQVSVGQ AGTTNKTVKL PKNFTLLGPG PGYTCGPAKI VPPTKFFTPD LRRKTQALMT
201: WNVTCTYSQF LARKHPSCCV SMSSFYNETI TTCPSCACGC ENRNKCIKSD SKLLSVVGVN TPRKDNAPLI QCTHHMCPIR VHWHVKLNYK DYWRVKLTVT
301: NFNYRINYTQ WTLVVQHPNL NNVTQVFSFD YKPLVPYQSI NDTGMFYGMK FYNDLLMEAG PSGTVQSEVL LQKDKETFSF NQGWAFPRKV YFNGDECMLP
401: PPDTYPYLPN SAHRSPAAFT TLLFSLLFLF TILF
101: CCKKNPTVVD LLPGTPYNQQ FTNCCKGGVL ASWGQDPQSS VSAFQVSVGQ AGTTNKTVKL PKNFTLLGPG PGYTCGPAKI VPPTKFFTPD LRRKTQALMT
201: WNVTCTYSQF LARKHPSCCV SMSSFYNETI TTCPSCACGC ENRNKCIKSD SKLLSVVGVN TPRKDNAPLI QCTHHMCPIR VHWHVKLNYK DYWRVKLTVT
301: NFNYRINYTQ WTLVVQHPNL NNVTQVFSFD YKPLVPYQSI NDTGMFYGMK FYNDLLMEAG PSGTVQSEVL LQKDKETFSF NQGWAFPRKV YFNGDECMLP
401: PPDTYPYLPN SAHRSPAAFT TLLFSLLFLF TILF
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.