CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023528.1-P	Field mustard	extracellular, plasma membrane, vacuole	94.52	99.31
CDX90983	Canola	extracellular	93.2	97.7
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	87.06	92.11
CDX69511	Canola	plasma membrane	89.91	90.11
CDY26444	Canola	plastid	70.39	87.7
CDY66895	Canola	cytosol	10.53	84.21
KRH45086	Soybean	plasma membrane	74.78	79.12
KRG93686	Soybean	extracellular, plasma membrane, vacuole	74.78	79.12
VIT_14s0083g01150.t01	Wine grape	plasma membrane	74.56	78.89
KRH01361	Soybean	extracellular, plasma membrane, vacuole	74.34	78.65
PGSC0003DMT400003723	Potato	extracellular	73.9	77.65
PGSC0003DMT400082702	Potato	extracellular	42.11	77.42
KRH18350	Soybean	cytosol	30.04	76.97
PGSC0003DMT400002674	Potato	plasma membrane	72.15	75.81
CDY24004	Canola	cytosol, nucleus, plastid	12.06	64.71
CDY70289	Canola	extracellular	55.48	63.73
CDX86358	Canola	extracellular	60.75	63.53
CDY26445	Canola	cytosol	23.46	63.31
CDX85277	Canola	extracellular	60.53	63.3
CDY58691	Canola	plasma membrane	62.5	62.23
CDY02184	Canola	plasma membrane	62.28	62.14
CDX87193	Canola	plasma membrane	60.96	60.96
CDY16831	Canola	plasma membrane	61.18	60.92
CDY60470	Canola	plasma membrane	60.09	59.83
CDY43250	Canola	plasma membrane	59.65	59.52
CDY29033	Canola	cytosol	22.15	55.49
CDY02181	Canola	endoplasmic reticulum, extracellular	24.12	53.4
CDY42842	Canola	cytosol	14.25	53.28
CDY58695	Canola	extracellular	23.68	52.43
CDX93481	Canola	plasma membrane	45.61	47.38
CDX70627	Canola	cytosol, nucleus, plasma membrane	88.82	47.2
CDY31063	Canola	plasma membrane	44.74	47.0
CDY20671	Canola	extracellular, plasma membrane, vacuole	44.96	45.05
CDY14723	Canola	cytosol	28.07	40.25
CDX94950	Canola	nucleus	42.98	34.39
CDX87194	Canola	mitochondrion	12.06	26.32
CDY57659	Canola	cytosol	8.77	26.14
CDY19626	Canola	mitochondrion	20.83	23.06
CDY09102	Canola	cytosol	13.16	22.99
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.73	19.7
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.07	19.19
CDY36030	Canola	vacuole	26.97	18.98
CDY34424	Canola	plasma membrane	27.41	18.97
CDY32210	Canola	plasma membrane	27.41	18.94
CDY49611	Canola	plasma membrane	27.41	18.88
CDX82237	Canola	endoplasmic reticulum, vacuole	27.63	18.86
CDY00037	Canola	plasma membrane	27.19	18.73
CDX89278	Canola	extracellular, golgi, vacuole	26.97	18.55
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	26.75	18.35
CDY29275	Canola	extracellular, plasma membrane, vacuole	26.54	18.2
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.75	17.86
CDY55591	Canola	plasma membrane	28.51	15.62
CDY43072	Canola	plasma membrane	28.29	15.27

Protein Annotations

MapMan:21.1.2.2	GO:A0A078DE42	EnsemblPlants:CDX85543	ProteinID:CDX85543	ProteinID:CDX85543.1	InterPro:COBRA_pln
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00143256001	PFAM:PD140986	PFAM:PF04833
PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SignalP:SignalP-noTM	UniParc:UPI0004EE9663	SEG:seg

Description

BnaA02g02700D

Coordinates

chrLK031842:-:554888..557049

Molecular Weight (calculated)

51174.5 Da

IEP (calculated)

9.026

GRAVY (calculated)

-0.145

Length

456 amino acids

Sequence
(BLAST)

001: MNLFFCSCFF FMIIFSTSSA YDPLDPNGNI TLKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWAW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKIPTVVDL LPGVPYNQQF SNCCKGGVVG AWGQDPSSAV SQFQVSVGLA GTTNKTVKLP KNFTLLGPGP GYSCGPAKIV PSTVFLTTDK RRKTQALSKK
201: YFSLIYIHTN GKDFFFCTNV TWNVTCTYSQ FLARKHPSCC VSFSSFYNDT ITPCPSCACG CENKKSCVKA DSKILTKKGL NTPRKDNAPL LQCTHHMCPV
301: RVHWHVKTNY KDYWRVKIAI TNFNYRMNHT LWTLAVQHPN LNNVTQVFSF DYKSVAPYGS INDTGMFFGT KFYNDLLMEA GPSGNVQSEV LLQKDEKTFT
401: FKQGWAFPRK VYFNGDECML PPPDAYPFLP NSARGNLASL WTVSLTVVLV VFISSL

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.