Factsheet for PGSC0003DMT400005270

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080250.1.1	Tomato	cytosol	40.64	85.09
KRH27599	Soybean	extracellular	49.86	54.84
PGSC0003DMT400002678	Potato	vacuole	50.42	54.61
GSMUA_Achr3P21560_001	Banana	plasma membrane	50.0	54.57
GSMUA_Achr4P33540_001	Banana	vacuole	50.56	54.44
KRH77883	Soybean	extracellular, plasma membrane, vacuole	45.53	54.42
PGSC0003DMT400065836	Potato	cytosol	35.06	53.52
PGSC0003DMT400037398	Potato	vacuole	49.02	52.94
TraesCS7A01G136600.1	Wheat	mitochondrion	48.74	51.78
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	48.32	51.49
TraesCS7D01G136500.1	Wheat	mitochondrion	48.32	51.34
Os06t0685100-00	Rice	plasma membrane	48.6	50.95
TraesCS7B01G037700.1	Wheat	mitochondrion	47.91	50.89
KXG36369	Sorghum	mitochondrion	47.77	50.82
Zm00001d021661_P001	Maize	mitochondrion	47.35	50.0
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	44.41	48.85
PGSC0003DMT400002688	Potato	cytosol	8.1	44.96
PGSC0003DMT400003723	Potato	extracellular	17.46	28.8
PGSC0003DMT400002674	Potato	plasma membrane	17.18	28.34
PGSC0003DMT400068328	Potato	extracellular	17.46	28.15
PGSC0003DMT400082702	Potato	extracellular	9.64	27.82
PGSC0003DMT400003470	Potato	extracellular	17.32	27.74
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	16.9	26.59
PGSC0003DMT400063318	Potato	cytosol	14.66	25.99
PGSC0003DMT400004139	Potato	extracellular	6.42	22.33
PGSC0003DMT400081003	Potato	cytosol	2.23	13.79
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	2.93	13.46

Protein Annotations

EntrezGene:102586485	MapMan:21.1.2.2	MapMan:27.4.5.2	Gene3D:3.90.810.10	InterPro:COBRA_pln	InterPro:CRIB_dom
InterPro:CRIB_dom_sf	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:IPR000095	InterPro:IPR036936
UniProt:M0ZPP5	PFAM:PD140986	PFAM:PF00786	PFAM:PF04833	EnsemblPlantsGene:PGSC0003DMG400002075	PGSC:PGSC0003DMG400002075
EnsemblPlants:PGSC0003DMT400005270	PFscan:PS50108	PANTHER:PTHR31052	PANTHER:PTHR31052:SF2	SMART:SM00285	UniParc:UPI00029507DF
SEG:seg	:	:	:	:	:

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400002075]

Coordinates

chr2:+:36059302..36064380

Molecular Weight (calculated)

80144.4 Da

IEP (calculated)

9.672

GRAVY (calculated)

-0.358

Length

716 amino acids

Sequence
(BLAST)

001: MGTKMKGIYK YISNIFVVKE REIEIGFPTD VKHVAHIGWD GQSGNAPSWM NEFKTGPDFA ATSIGNSGSA HSPWASQDYT ESLRQQQSSD LYRDVTPTVG
101: PKKQKRRKAK STSSPRTKEL PHVKNATAQA WAFKATATVL NAGIYELKNW KIFIGFQNRE LLVSASNAVL LSGDDFPAPV GNGTYLAGYP QADLKTSIDT
201: AGDVKKIQAE IELTGTQFGI KPPGYPMPKT IKLFNDGYKC PVAKRKAIKM HVCCVKDPKF KVKNFTTKYF PRQNGDLLIS YDVMQAYPNN YQAQVTIQNS
301: NPLGRLDQWN LTWEWMRGEF IYSMRGAYTR KKDYSNCVYG AAGQYYKDFD FSKVLNCEKK PTIADLPRER AQDKDVGMLP FCCRNGSIMP TVMNATNSKS
401: VFQLQVYKLP PDLNLTALYP PERWKIVGLL NPDYKCGQAL RVDEAQFLDP TGLHATVIAI ASWQIVCNIT KPKDRANRCC VSYSAYYNDS AIPCNTCACG
501: CDNSVKCSQN APGLLLPPEA LLVPFANRRE KSLYWAKLKH YHVPKQLPCG DNCGVTINWH IDSNYKSGWT ARITLFNWGA VNFVDWFVGI QFKKTGSGFA
601: QAFSFNGTLL RNINDTIFLK GLPGLNYLMA EADGPKPGDP RVPGKQQSVL RFNKKHLKGI DILKGDGFPT KLLFNGEECA LPTHLLAADG RKWRAKSWVI
701: AIITLLTFLL MLKDLQ

Best Arabidopsis Sequence Match ( AT3G20580.1 )
(BLAST)

001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD

Arabidopsis Description

COBL10COBRA-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU0]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.