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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400065836 Potato cytosol 72.04 100.0
Solyc01g065530.2.1 Tomato nucleus, plastid 96.77 97.22
VIT_05s0077g01470.t01 Wine grape plasma membrane 68.2 68.2
KRH02312 Soybean endoplasmic reticulum, extracellular 65.28 65.99
KRH50776 Soybean endoplasmic reticulum, vacuole 64.36 65.16
CDY34424 Canola plasma membrane 63.13 62.37
CDY32210 Canola plasma membrane 62.67 61.82
Bra033528.1-P Field mustard plasma membrane 62.52 61.76
AT4G16120.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 62.21 61.27
AT3G16860.1 Thale cress plasma membrane 60.52 60.34
CDY52722 Canola endoplasmic reticulum, plasma membrane, vacuole 58.83 57.59
CDY34980 Canola endoplasmic reticulum, plasma membrane, vacuole 58.06 56.67
Bra021208.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 57.76 56.37
PGSC0003DMT400002688 Potato cytosol 10.45 52.71
PGSC0003DMT400002678 Potato vacuole 52.23 51.44
GSMUA_AchrUn_... Banana plasma membrane 52.53 51.27
GSMUA_Achr11P... Banana plasma membrane 53.15 51.18
Zm00001d028826_P001 Maize plasma membrane 52.23 50.97
PGSC0003DMT400037398 Potato vacuole 51.61 50.68
Os03t0301200-01 Rice extracellular, plasma membrane, vacuole 51.61 50.07
EER95000 Sorghum endoplasmic reticulum, extracellular, plasma membrane 51.46 50.0
TraesCS4D01G188600.1 Wheat golgi 50.23 48.59
TraesCS4B01G187300.1 Wheat golgi 49.77 48.58
TraesCS4A01G117100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 49.77 48.14
GSMUA_Achr8P10390_001 Banana cytosol 18.43 48.0
Zm00001d007208_P001 Maize extracellular, plasma membrane, vacuole 48.08 47.86
OQU90545 Sorghum extracellular, plasma membrane, vacuole 47.16 46.44
TraesCS2B01G107700.1 Wheat plasma membrane 45.78 45.22
TraesCS2D01G092100.1 Wheat plasma membrane 45.78 45.15
HORVU0Hr1G030030.1 Barley extracellular, plasma membrane 45.78 45.08
PGSC0003DMT400005270 Potato cytosol 48.85 44.41
Os07t0690900-01 Rice plasma membrane 45.31 43.7
HORVU2Hr1G015440.1 Barley cytosol 36.56 43.19
TraesCS2A01G092900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 45.47 42.77
HORVU4Hr1G054770.1 Barley plastid 50.54 41.65
PGSC0003DMT400082702 Potato extracellular 12.29 32.26
PGSC0003DMT400003723 Potato extracellular 19.82 29.72
PGSC0003DMT400002674 Potato plasma membrane 19.35 29.03
PGSC0003DMT400068328 Potato extracellular 19.51 28.6
PGSC0003DMT400003470 Potato extracellular 19.35 28.19
PGSC0003DMT400063055 Potato extracellular, mitochondrion 18.74 26.81
PGSC0003DMT400063318 Potato cytosol 16.59 26.73
PGSC0003DMT400004139 Potato extracellular 7.22 22.82
PGSC0003DMT400002667 Potato cytosol, golgi, peroxisome 3.38 14.1
PGSC0003DMT400081003 Potato cytosol 2.46 13.79
Protein Annotations
EntrezGene:102579279MapMan:21.1.2.2InterPro:COBRA_plnGO:GO:0005575GO:GO:0008150GO:GO:0009987
GO:GO:0010215GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016049GO:GO:0031225
GO:GO:0040007UniProt:M1CEN9PFAM:PD140986PFAM:PF04833EnsemblPlantsGene:PGSC0003DMG400025627PGSC:PGSC0003DMG400025627
EnsemblPlants:PGSC0003DMT400065840PANTHER:PTHR31052PANTHER:PTHR31052:SF3SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000296F1A0
RefSeq:XP_006363581.1SEG:seg::::
Description
Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400025627]
Coordinates
chr1:-:12000588..12005950
Molecular Weight (calculated)
70999.9 Da
IEP (calculated)
5.569
GRAVY (calculated)
-0.062
Length
651 amino acids
Sequence
(BLAST)
001: MAVTTFFSLC LLIITAALQV AGQTTPVAEA PAPAADDCNG IFLQYVFTSG SKIKPTLKAR QPYKFQSILS ITNNGLDELK LWRVFVGFQH DEILVSASNA
101: VLDDGESFPA LVGNGTVFAG FPAADLKTAI ETAGDTTQTT AQIKIVGTQF GVGSPNVPMP SNISLENDGF ICPKPSMQGK SVMQVCCIKD EKFKTNLTLG
201: EKFSPRQDGD LTIMYDILRT YDSNYWAQVT IANHNPLGRL DNWKLSWDWM KDEFIWEMKG AYPSVVDTSE CVFGPQAKFY QNLDFSTGLN CQRRPTLIDL
301: PLEKTNDTKL GMIPFCCRNG TILPPAMDPS KSVSAFQMNV FKMPPDLNRS SFTPPQNWKI EGRLNPDYKC GPPVRVSPTQ VPDPSGLLPA TSVFASWQVV
401: CNITQPKGAS PRCCVSFSAF YNESIIPCPT CACGCPSNTG RTCSTKAPAL LLPSQALLVP FDNRTKMSLA WADINHLPVS NPLPCGDNCG VSINWHLFTD
501: YRGGWSARIT IFNWEDAAFA DWFTAVELDK AAAGFDAVYS FNGTMLDGVN NTIFMQGLPG LNYIVAEADG ANPEKDPRVP GKQQSVISFT KKNIPNINIA
601: AGDGFPTKLY FNGEECSLPK VLPTSSSSRI SSFTVTTSIL AAVVVFMLVR Q
Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)
001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A
Arabidopsis Description
COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.