Factsheet for PGSC0003DMT400002678

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 6
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002688	Potato	cytosol	18.91	96.9
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	86.38	92.85
PGSC0003DMT400037398	Potato	vacuole	74.13	73.91
CDY19626	Canola	mitochondrion	38.43	61.65
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	35.25	61.32
VIT_10s0116g00620.t01	Wine grape	extracellular	60.21	60.86
VIT_19s0177g00160.t01	Wine grape	plasma membrane	59.61	60.15
CDY36030	Canola	vacuole	58.85	60.03
AT3G20580.1	Thale cress	endoplasmic reticulum, vacuole	60.51	59.52
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	59.46	58.83
CDX82237	Canola	endoplasmic reticulum, vacuole	59.3	58.68
Bra023941.1-P	Field mustard	plasma membrane	58.7	57.74
KRH22248	Soybean	golgi, vacuole	55.98	55.56
GSMUA_Achr4P33540_001	Banana	vacuole	55.52	55.19
GSMUA_Achr3P21560_001	Banana	plasma membrane	54.61	55.03
KRH27088	Soybean	mitochondrion	55.52	54.69
PGSC0003DMT400065836	Potato	cytosol	38.73	54.58
AT4G27110.1	Thale cress	extracellular	54.92	54.34
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	54.61	54.29
CDY57659	Canola	cytosol	12.56	54.25
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	52.8	53.45
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	53.56	53.39
CDX89278	Canola	extracellular, golgi, vacuole	53.4	53.24
CDY29275	Canola	extracellular, plasma membrane, vacuole	53.56	53.23
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.61	52.86
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	51.44	52.23
TraesCS7D01G136500.1	Wheat	mitochondrion	53.25	52.23
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	52.8	51.93
TraesCS7A01G136600.1	Wheat	mitochondrion	52.8	51.78
TraesCS7B01G037700.1	Wheat	mitochondrion	52.65	51.63
KXG36369	Sorghum	mitochondrion	52.5	51.56
Os06t0685100-00	Rice	plasma membrane	53.1	51.39
Zm00001d021661_P001	Maize	mitochondrion	52.65	51.33
PGSC0003DMT400005270	Potato	cytosol	54.61	50.42
CDY09102	Canola	cytosol	19.67	49.81
Bra020151.1-P	Field mustard	cytosol	18.76	47.88
CDY55591	Canola	plasma membrane	58.4	46.39
CDY43072	Canola	plasma membrane	58.25	45.56
PGSC0003DMT400082702	Potato	extracellular	11.5	30.65
PGSC0003DMT400002674	Potato	plasma membrane	19.52	29.72
PGSC0003DMT400003723	Potato	extracellular	18.76	28.57
PGSC0003DMT400003470	Potato	extracellular	18.61	27.52
PGSC0003DMT400068328	Potato	extracellular	18.31	27.25
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	18.46	26.81
PGSC0003DMT400063318	Potato	cytosol	15.43	25.25
PGSC0003DMT400004139	Potato	extracellular	6.81	21.84
PGSC0003DMT400081003	Potato	cytosol	2.72	15.52
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	3.33	14.1

Protein Annotations

EntrezGene:102604049	MapMan:21.1.2.2	InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225
GO:GO:0040007	UniProt:M0ZKG7	PFAM:PD140986	PFAM:PF04833	EnsemblPlantsGene:PGSC0003DMG400001032	PGSC:PGSC0003DMG400001032
EnsemblPlants:PGSC0003DMT400002678	PANTHER:PTHR31052	PANTHER:PTHR31052:SF2	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002969BF0
RefSeq:XP_006366033.1	SEG:seg	:	:	:	:

Description

COBRA 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400001032]

Coordinates

chr7:+:54402291..54404862

Molecular Weight (calculated)

73891.9 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.343

Length

661 amino acids

Sequence
(BLAST)

001: MQIPWRNISW VLLVLFAYNC QTCNGQDYGG EEKPAAPPPE QETCDGIFIT YNFDGREKIY PLVKNVSAQG WSFKSMLTVL NAGTFELKSW QVFVGFQHKE
101: LLVSADGAVA IDGDGFPVRV GKNGTTLAGY PQSDLKTAID TAGDFTQMSA QINIKGTQFG LKEKTNPMPS TIKLVNEGYK CPAPKRYKTY MHVCCKRDPK
201: FKPKKVITKF MPRRYGDLSI TYDVLSAFAN RYQAQVTIDN LNPLGRLDHW NLTWEWMRNE FINTIKGAHT HKIDPSECIY GPQGQYYKDF DFTPVINCQK
301: KPIISDLPKE KANDDKIGKL PYCCRNGTLL SPIMNETEAR SIFQMEVFKL PPDLNRTALN PPQNWKIVGT INPSYTCGPP VRIDPSAFPD PKGIGIATAV
401: ASWQITCNIT RPKPKAAKCC VSFSAYYAES VIPCNTCACG CEQTSKCDAN KKPLLLPPEA LLVPFENRDL MAKAWSNIKH LGPMPKKLPC PDNCGVSINW
501: HVDSNYKTGW TARITLFNWG NNAFENWFSA IQMKKDVANG YENVYSFNGT KLPKEKSNTI FMQGLPGLKF LVGEVNGTNP NKDPRVPGKQ QSIISFLKKN
601: TPHINVDGGD GFPSKVFFNG EECALPPEFP KNTAAFKTKF GVLPAVLLAL LTFLLLTDWL H

Best Arabidopsis Sequence Match ( AT3G20580.1 )
(BLAST)

001: MRAIDVKTGM KIPWDVRYSL SLFIFLSSIL FLSNGQDYGM PGEDGGGGAE PPPEMAHCNG IFMSYNFGSR EREYPHVKNV TAQSWAFKST AMIVNAGREE
101: LKGWQMFIGF RHKELIVSAT GATPMDGDYP LDASNGTTFV GSPNMDLKTS IETAGDFTQI SANIEITGTL FGVSKAVTPM PRTIKLTNDG WECPAAKRKG
201: GSMHVCCKRN PKIKNKIGLK TKFAPRRYGD LNIVYDVLQS FDSNYLAQVT IDNDNPLGRL DRWNLTFEWM RGEFINTMRG AYTHKKDPSE CLYSKAGQYY
301: KDLDFSQVMN CQRKPAISDL PPEKKEDNMT GKLPFCCKNG TLLPPIMDPS KSRSMFQLQV FKLPPDLNRT ALYPPQHWKI DGVLNPQYKC GPPVRVDPSQ
401: FPDPSGLLAV TYAISSWQVV CNITKPKAQA SRCCVSFSAF YNNSAVPCNT CACGCNDIDT DTCNANSNPL LLPPDALLVP FDNRTLKAKA WAKQNHMPVP
501: KKLPCPDNCG VSINWHVSTD YKNGWTARLT VFNWRDFAFE DWFVAIDMGK AGPGYENVYS FNGTRVPPSN RTVIFQGLPG MNYLVGQVNG TNPLRDPPVP
601: GKQQSVISFT KKNIKGLNIP EGDGFPTKLF FNGEECALPK HFPKKSSGHR RGISVSMSFV FATIAAFALM MD

Arabidopsis Description

COBL10COBRA-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJU0]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.