Factsheet for PGSC0003DMT400063055

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114900.2.1	Tomato	extracellular	96.04	97.76
PGSC0003DMT400002674	Potato	plasma membrane	73.19	76.73
PGSC0003DMT400082702	Potato	extracellular	41.76	76.61
PGSC0003DMT400003723	Potato	extracellular	72.97	76.5
GSMUA_Achr4P03210_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	69.67	70.92
EER94687	Sorghum	extracellular	68.35	69.73
GSMUA_Achr4P14440_001	Banana	plasma membrane	69.89	69.43
Zm00001d047276_P001	Maize	plasma membrane	67.69	68.44
TraesCS5D01G107900.1	Wheat	extracellular	67.03	67.93
TraesCS5A01G095200.1	Wheat	extracellular	67.03	67.93
TraesCS5B01G101400.1	Wheat	extracellular	67.03	67.78
HORVU3Hr1G009960.1	Barley	plastid	32.09	66.97
TraesCS2D01G182400.1	Wheat	plasma membrane	65.49	66.67
EER99679	Sorghum	plasma membrane	65.27	66.59
TraesCS2B01G201400.1	Wheat	plasma membrane	65.27	66.29
TraesCS2A01G175000.1	Wheat	plasma membrane	65.27	66.15
HORVU3Hr1G007580.2	Barley	extracellular	54.51	66.13
Os03t0416200-01	Rice	extracellular, golgi, plasma membrane	67.91	66.03
Zm00001d022082_P001	Maize	extracellular, plasma membrane, vacuole	64.4	65.55
Os07t0604400-00	Rice	extracellular	63.52	64.08
PGSC0003DMT400003470	Potato	extracellular	61.32	62.42
HORVU2Hr1G033060.13	Barley	mitochondrion	61.1	62.19
PGSC0003DMT400068328	Potato	extracellular	60.22	61.71
TraesCSU01G047200.1	Wheat	plastid	31.43	61.64
TraesCS3D01G047900.1	Wheat	plastid	33.19	60.64
HORVU0Hr1G004650.3	Barley	mitochondrion	53.41	58.55
PGSC0003DMT400063318	Potato	cytosol	50.99	57.43
HORVU2Hr1G033080.1	Barley	extracellular	20.66	51.09
PGSC0003DMT400004139	Potato	extracellular	17.8	39.32
VIT_17s0000g05060.t01	Wine grape	plasma membrane	74.29	36.3
PGSC0003DMT400081003	Potato	cytosol	6.81	26.72
PGSC0003DMT400065836	Potato	cytosol	25.93	25.16
PGSC0003DMT400002688	Potato	cytosol	7.03	24.81
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	8.35	24.36
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	26.81	18.74
PGSC0003DMT400002678	Potato	vacuole	26.81	18.46
PGSC0003DMT400037398	Potato	vacuole	26.81	18.4
PGSC0003DMT400005270	Potato	cytosol	26.59	16.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400063055	EnsemblPlantsGene:PGSC0003DMG400024530	EntrezGene:102584372	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	PFAM:PD140986	PFAM:PF04833	PGSC:PGSC0003DMG400024530
PIRSF:PIRSF038122	RefSeq:XP_006345105.1	UniParc:UPI000295C5A8	UniProt:M1CA00	MapMan:21.1.2.2	:

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG400024530]

Coordinates

chr3:+:54861552..54863584

Molecular Weight (calculated)

51601.0 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.284

Length

455 amino acids

Sequence
(BLAST)

001: MFQKRLSFKG KDYSQQCQFL FPLAKLTFFA VVLSSVLPHA DAFDPLDPFG NITIKWDVMS WAPDGYVAVV TMNNFQMYRH IMSPGWTLGW NWPKKEVIWS
101: IVGSQTTEQG DCSKFKGNVP HCCKRDPVLV DLLPGVPYNQ QFSNCCKGGV LASWGEDPSE SVSSFQISVG LAGTSNKTVK LPKNFTLLGP GPGYTCGPAK
201: IVPSTVFLTA DHRRKTQALM TWNVTCTYSQ FLSSKYPSCC VSFSTFYNDT ITPCPSCACG CNHKHNCIMG DSEKLKRKGI NTPRKDNEPL LQCTHHMCPI
301: RVHWHVKLNY KDYWRVKIAI TNFNYRQNHS HWTLVAQHPN LNNVTQVFSF DYKPLVPYQS INDTGMFYGM KFYNDLLMEA GPSGNVQSEV LMQKDKNTFT
401: LKSGWGFPRR VYFNGDECKL PPPDSYPILP NSAEKRPFSF SNTAICTILM IFLTW

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.