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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d047276_P001 Maize plasma membrane 94.62 93.78
TraesCS5D01G107900.1 Wheat extracellular 84.3 83.74
TraesCS5A01G095200.1 Wheat extracellular 84.08 83.52
TraesCS5B01G101400.1 Wheat extracellular 84.08 83.33
Os03t0416200-01 Rice extracellular, golgi, plasma membrane 87.0 82.91
HORVU3Hr1G007580.2 Barley extracellular 68.61 81.6
HORVU3Hr1G009960.1 Barley plastid 38.34 78.44
TraesCSU01G047200.1 Wheat plastid 39.01 75.0
EER99679 Sorghum plasma membrane 74.66 74.66
TraesCS3D01G047900.1 Wheat plastid 41.26 73.9
GSMUA_Achr4P03210_001 Banana endoplasmic reticulum, extracellular, plasma membrane 73.09 72.93
VIT_14s0083g01150.t01 Wine grape plasma membrane 69.73 72.16
AT5G15630.1 Thale cress extracellular, plasma membrane, vacuole 69.51 71.93
Solyc03g070440.2.1 Tomato extracellular 69.51 71.93
PGSC0003DMT400002674 Potato plasma membrane 69.73 71.66
KRH01361 Soybean extracellular, plasma membrane, vacuole 69.06 71.46
PGSC0003DMT400082702 Potato extracellular 39.69 71.37
Bra008684.1-P Field mustard extracellular 61.88 71.32
KRH45086 Soybean plasma membrane 68.83 71.23
Bra023528.1-P Field mustard extracellular, plasma membrane, vacuole 69.28 71.2
GSMUA_Achr4P14440_001 Banana plasma membrane 73.09 71.18
PGSC0003DMT400003723 Potato extracellular 69.06 70.97
KRG93686 Soybean extracellular, plasma membrane, vacuole 68.16 70.53
Solyc02g089130.2.1 Tomato extracellular 68.39 70.28
KRH18350 Soybean cytosol 28.03 70.22
Solyc03g114900.2.1 Tomato extracellular 70.18 70.02
PGSC0003DMT400063055 Potato extracellular, mitochondrion 69.73 68.35
EER90860 Sorghum extracellular, golgi, plasma membrane 64.13 63.7
VIT_17s0000g05050.t01 Wine grape cytosol 8.52 63.33
EER90859 Sorghum extracellular 58.52 61.41
EER97506 Sorghum extracellular, plasma membrane 63.0 61.35
KRH63180 Soybean plasma membrane 61.44 59.83
KRH54737 Soybean plasma membrane 61.44 59.83
OQU92393 Sorghum extracellular 61.21 59.22
CDY26445 Canola cytosol 20.4 53.85
Bra012993.1-P Field mustard endoplasmic reticulum, extracellular 24.44 52.91
AT5G60950.1 Thale cress endoplasmic reticulum 23.32 50.98
Solyc02g064790.1.1 Tomato extracellular, vacuole 7.4 47.83
KXG26803 Sorghum extracellular, plasma membrane 47.31 47.2
VIT_17s0000g05060.t01 Wine grape plasma membrane 70.63 33.83
OQU90545 Sorghum extracellular, plasma membrane, vacuole 28.48 19.21
EER95000 Sorghum endoplasmic reticulum, extracellular, plasma membrane 28.48 18.96
KXG36369 Sorghum mitochondrion 26.46 17.53
Protein Annotations
MapMan:21.1.2.2EntrezGene:8070042UniProt:C5WWK3InterPro:COBRA_plnEnsemblPlants:EER94687ProteinID:EER94687
ProteinID:EER94687.1GO:GO:0005575GO:GO:0008150GO:GO:0009987GO:GO:0010215GO:GO:0016020
GO:GO:0016043GO:GO:0016049GO:GO:0031225GO:GO:0040007PFAM:PD140986PFAM:PF04833
PIRSF:PIRSF038122PANTHER:PTHR31673PANTHER:PTHR31673:SF2EnsemblPlantsGene:SORBI_3001G336700SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A83205RefSeq:XP_002467689.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:-:62492223..62494979
Molecular Weight (calculated)
48857.7 Da
IEP (calculated)
8.576
GRAVY (calculated)
-0.056
Length
446 amino acids
Sequence
(BLAST)
001: MGLRDSSVLL AALSLALAYC SVSVVAYDPL DPRGNITIKW DVISWTPDGY VAMVTMSNYQ MYRHIMSPGW TVGWSWAKKE VIWSIVGAQA TEQGDCSKFK
101: GGIPHCCKRT PAVVDLLPGV PYNQQIANCC KAGVVSAYGQ DQAGSVSAFQ VSVGLAGTTN KTVKLPKNFT LMGPGPGYTC GPATVVPSTV YWTPDHRRRT
201: QALMTWTVTC TYSQQLASKY PSCCVSFSSF YNDTIVPCAK CACGCGHGGH AGPGGCIEGD SKRALSPGVN TPRKDGQALL QCTPHMCPVR VHWHVKLNYK
301: DYWRAKIAIT NFNYRMNYTQ WTLVAQHPNL DNVTEVFSFQ YKPLLPYGSI NDTGMFYGLK FYNDFLMEAG PFGNVQSEVL MRKDARTFTF SQGWAFPRKI
401: YFNGDECKMP PPDSYPYLPN AAPVAASQLV VSAAASAFLL ALLLVA
Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
Arabidopsis Description
COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.