Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002803_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 82.77 | 84.86 |
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 54.59 | 65.42 |
| Os04t0540300-00 | Rice | plasma membrane | 63.98 | 65.15 |
| TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.97 | 62.67 |
| GSMUA_Achr4P27070_001 | Banana | cytosol | 52.57 | 56.76 |
| TraesCS2B01G406700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 51.01 | 53.15 |
| Bra030800.1-P | Field mustard | cytosol | 48.32 | 51.8 |
| VIT_12s0035g00630.t01 | Wine grape | extracellular, plasma membrane | 49.22 | 51.04 |
| Solyc01g103860.2.1 | Tomato | cytosol | 48.1 | 50.83 |
| CDY31063 | Canola | plasma membrane | 49.22 | 50.69 |
| CDX93481 | Canola | plasma membrane | 49.22 | 50.11 |
| Bra019992.1-P | Field mustard | cytosol | 44.07 | 49.62 |
| AT1G09790.1 | Thale cress | plasma membrane | 49.89 | 49.12 |
| CDY20671 | Canola | extracellular, plasma membrane, vacuole | 48.77 | 47.91 |
| EER97506 | Sorghum | extracellular, plasma membrane | 48.99 | 47.82 |
| EER94687 | Sorghum | extracellular | 47.2 | 47.31 |
| OQU92393 | Sorghum | extracellular | 48.77 | 47.29 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 47.2 | 46.99 |
| EER99679 | Sorghum | plasma membrane | 46.31 | 46.41 |
| EER90859 | Sorghum | extracellular | 43.85 | 46.12 |
| CDX94950 | Canola | nucleus | 45.86 | 35.96 |
| HORVU2Hr1G092510.1 | Barley | mitochondrion | 25.73 | 35.94 |
| OQU90545 | Sorghum | extracellular, plasma membrane, vacuole | 24.83 | 16.79 |
| KXG36369 | Sorghum | mitochondrion | 24.61 | 16.34 |
| EER95000 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 24.16 | 16.12 |
Protein Annotations
| MapMan:21.1.2.2 | UniProt:A0A1B6PMA8 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 |
| EnsemblPlants:KXG26803 | ProteinID:KXG26803 | ProteinID:KXG26803.1 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF12 | EnsemblPlantsGene:SORBI_3006G163200 | SignalP:SignalP-noTM | UniParc:UPI00081AE999 | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:+:52085663..52088430
Molecular Weight (calculated)
50548.0 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.210
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MERFVFVLLV FLCNSSFRFT ATDAYDPVDP NGNITINWDF QVLNVKDMSP YTVMVSIHNY QMYRHIEHPG WRLSWNWTGK EVIWNTVGAE TTEQGDCSRV
101: GAANARPHCC LRRPVMVDLP PGTPYNRQVA NCCRGGVLSS FVQNNLTSTA AFQMVVGEFA LAKDDGGGSM EPEKPWHFDI GVPGYTCSNA TTVAPTRVKV
201: DKNRYEQVLL TWQVTCSYSQ YRASGVPSCC VSMSTFYSET IVDCPRCSCA CQGSPTPTSP QCVSVDQPRT PALPASSDDE PAAPIVWCSE HMCPIRVHWH
301: VKVNYRQYWR VKVTVSNYNL VKNYSDWNLV LQHPNLRSLT QLFSFNYKPL VEYGSFNDTG MFWGLRFYNE MLLQDGNVQT EMILEKESDF TYSGGWAFPR
401: RVYFNGQECV MPPADQYPKL PNGASELRGS SLIAGNCLLL LFFFVLV
101: GAANARPHCC LRRPVMVDLP PGTPYNRQVA NCCRGGVLSS FVQNNLTSTA AFQMVVGEFA LAKDDGGGSM EPEKPWHFDI GVPGYTCSNA TTVAPTRVKV
201: DKNRYEQVLL TWQVTCSYSQ YRASGVPSCC VSMSTFYSET IVDCPRCSCA CQGSPTPTSP QCVSVDQPRT PALPASSDDE PAAPIVWCSE HMCPIRVHWH
301: VKVNYRQYWR VKVTVSNYNL VKNYSDWNLV LQHPNLRSLT QLFSFNYKPL VEYGSFNDTG MFWGLRFYNE MLLQDGNVQT EMILEKESDF TYSGGWAFPR
401: RVYFNGQECV MPPADQYPKL PNGASELRGS SLIAGNCLLL LFFFVLV
001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
Arabidopsis Description
COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.