Factsheet for VIT_17s0000g05070.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g01160.t01	Wine grape	vacuole	82.68	86.47
PGSC0003DMT400003470	Potato	extracellular	79.82	81.43
Solyc02g089120.2.1	Tomato	extracellular	79.61	81.21
Solyc02g065770.2.1	Tomato	extracellular	78.07	80.18
GSMUA_Achr4P01440_001	Banana	extracellular, plasma membrane	79.61	79.43
KRH03165	Soybean	extracellular	78.95	79.3
KRH54735	Soybean	endoplasmic reticulum	78.95	78.95
PGSC0003DMT400068328	Potato	extracellular	76.75	78.83
GSMUA_Achr1P24500_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	78.95	78.6
KRH63181	Soybean	endoplasmic reticulum	78.29	78.29
AT5G60920.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	77.63	77.63
Os05t0386800-01	Rice	extracellular	77.63	77.46
CDX87193	Canola	plasma membrane	76.1	76.1
Zm00001d013256_P001	Maize	extracellular	74.78	75.95
CDY16831	Canola	plasma membrane	76.1	75.76
Os03t0754500-00	Rice	extracellular	35.53	75.7
Zm00001d031479_P001	Maize	cytosol, mitochondrion	27.19	75.61
EER90860	Sorghum	extracellular, golgi, plasma membrane	74.34	75.5
Bra035951.1-P	Field mustard	plasma membrane	75.44	75.11
CDY02184	Canola	plasma membrane	75.0	74.84
Bra012996.1-P	Field mustard	plasma membrane	74.78	74.62
CDY58691	Canola	plasma membrane	74.78	74.45
Zm00001d034049_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	73.68	74.34
TraesCS6D01G364400.1	Wheat	extracellular	71.93	73.38
TraesCS6B01G418400.1	Wheat	extracellular	71.93	73.38
TraesCS5D01G401900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	73.46	73.3
GSMUA_Achr2P06240_001	Banana	mitochondrion	76.54	73.17
Os07t0604300-01	Rice	extracellular	71.49	73.09
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	73.25	73.09
TraesCS5B01G396900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	73.25	73.09
TraesCS6A01G379800.1	Wheat	extracellular	71.49	72.93
EER97506	Sorghum	extracellular, plasma membrane	72.59	72.27
EER90859	Sorghum	extracellular	66.45	71.29
HORVU5Hr1G095910.12	Barley	extracellular, vacuole	70.83	70.22
Zm00001d022081_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	70.39	69.78
Os03t0416300-01	Rice	extracellular	69.3	69.0
CDY42842	Canola	cytosol	18.42	68.85
Bra029346.1-P	Field mustard	cytosol, plasma membrane, plastid	18.42	68.29
OQU92393	Sorghum	extracellular	68.64	67.9
TraesCS2A01G175100.1	Wheat	extracellular	67.32	67.77
TraesCS2D01G182500.1	Wheat	golgi	66.45	66.59
VIT_14s0083g01150.t01	Wine grape	plasma membrane	62.72	66.36
TraesCS4A01G231200.1	Wheat	extracellular	66.89	66.3
TraesCS3A01G409900.1	Wheat	plastid	39.91	65.7
HORVU4Hr1G014530.1	Barley	extracellular	66.67	65.66
TraesCS4D01G082700.1	Wheat	extracellular	66.23	65.51
TraesCS4B01G084800.1	Wheat	extracellular	65.35	65.49
TraesCS2B01G201500.1	Wheat	plasma membrane	65.35	64.92
KRH56778	Soybean	extracellular	29.39	64.11
HORVU2Hr1G033070.14	Barley	mitochondrion	66.01	64.04
Os10t0497700-01	Rice	extracellular	58.55	62.82
TraesCS3B01G443000.1	Wheat	cytosol, plasma membrane, vacuole	55.7	60.77
HORVU5Hr1G067940.1	Barley	plasma membrane, plastid	62.28	60.17
HORVU5Hr1G096010.13	Barley	endoplasmic reticulum	36.62	59.86
TraesCS5D01G402000.1	Wheat	extracellular	29.82	59.65
TraesCS5B01G397000.2	Wheat	extracellular	29.17	58.59
TraesCS3D01G404800.2	Wheat	plasma membrane	57.46	57.33
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	49.12	51.97
VIT_03s0038g01430.t01	Wine grape	mitochondrion	17.54	48.48
VIT_17s0000g05050.t01	Wine grape	cytosol	6.36	48.33
VIT_03s0038g01420.t01	Wine grape	extracellular, plasma membrane	23.68	43.2
VIT_17s0000g05060.t01	Wine grape	plasma membrane	62.94	30.83
VIT_07s0005g01020.t01	Wine grape	plasma membrane	26.97	19.01
VIT_05s0077g01470.t01	Wine grape	plasma membrane	26.54	18.59
VIT_10s0116g00620.t01	Wine grape	extracellular	25.44	17.74
VIT_19s0177g00160.t01	Wine grape	plasma membrane	25.44	17.71

Protein Annotations

EntrezGene:100263971	wikigene:100263971	MapMan:21.1.2.2	ProteinID:CBI15330	ProteinID:CBI15330.3	InterPro:COBRA_pln
UniProt:D7SIL9	EMBL:FN594950	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
EntrezGene:LOC100263971	wikigene:LOC100263971	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673
PANTHER:PTHR31673:SF3	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00015CC09F	ArrayExpress:VIT_17s0000g05070	EnsemblPlantsGene:VIT_17s0000g05070
EnsemblPlants:VIT_17s0000g05070.t01	unigene:Vvi.14881	RefSeq:XP_002264600	RefSeq:XP_002264600.1	:	:

Description

COBRA-like protein [Source:UniProtKB/TrEMBL;Acc:D7SIL9]

Coordinates

chr17:-:5544541..5548234

Molecular Weight (calculated)

51025.1 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.106

Length

456 amino acids

Sequence
(BLAST)

001: MEFFFTSIAR SITKLSSYAI LLVLLFSCSI FTSTEAYDSL DPEGNITIKW DVMSWTPDGY VAVVTMFNFQ QYRHIQAPGW SLGWSWAKKE VIWSMMGGQT
101: TEQGDCSRFK GNVPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVINSWVQ DPANAASSFQ VSVGAAGTTN KTVKLPKNFT LRAPGPGYTC GPAKIVKPTK
201: FTTADQRRVT QALMTWNVTC TYSQFLAQKT PTCCVSLSSF YNNTIVSCPT CTCGCQNNLT HPGSCVDPNN PYLASVVEGS GKTSYQPLVQ CTSHMCPIRV
301: HWHVKLNYKD YWRVKITITN FNYRMNYTQW NLVVQHPNFD NLTQIFSFNY KSLTPYAAIN DTAMLWGVKF YNDLLSQAGP LGNVQSELLF RKDKATFTFD
401: KGWAFPRRIY FNGDNCVMPP PDAYPWLPNA SSRPTVSLLY SILTILAVSV IVLAYA

Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)

001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

Arabidopsis Description

COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.