Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 93.0 | 92.79 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 80.31 | 84.17 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 79.43 | 79.61 |
| Solyc02g089120.2.1 | Tomato | extracellular | 77.02 | 78.75 |
| PGSC0003DMT400003470 | Potato | extracellular | 76.59 | 78.3 |
| Solyc02g065770.2.1 | Tomato | extracellular | 75.93 | 78.15 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 28.01 | 78.05 |
| PGSC0003DMT400068328 | Potato | extracellular | 75.05 | 77.25 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 80.09 | 76.73 |
| KRH72178 | Soybean | mitochondrion | 61.49 | 76.15 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 75.49 | 75.66 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 74.18 | 75.5 |
| Zm00001d013256_P001 | Maize | extracellular | 74.18 | 75.5 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 73.96 | 75.45 |
| KRH03165 | Soybean | extracellular | 74.84 | 75.33 |
| Os05t0386800-01 | Rice | extracellular | 75.27 | 75.27 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 73.3 | 74.78 |
| Os03t0754500-00 | Rice | extracellular | 35.01 | 74.77 |
| KRH63181 | Soybean | endoplasmic reticulum | 74.4 | 74.56 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 73.52 | 74.34 |
| CDX86358 | Canola | extracellular | 70.68 | 74.08 |
| Bra025406.1-P | Field mustard | extracellular | 70.68 | 74.08 |
| KRH54735 | Soybean | endoplasmic reticulum | 73.74 | 73.9 |
| CDX87193 | Canola | plasma membrane | 73.09 | 73.25 |
| KRG93684 | Soybean | extracellular, vacuole | 72.65 | 73.13 |
| CDY02184 | Canola | plasma membrane | 73.09 | 73.09 |
| CDX85277 | Canola | extracellular | 69.58 | 72.94 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 71.33 | 72.93 |
| CDY16831 | Canola | plasma membrane | 73.09 | 72.93 |
| Bra012996.1-P | Field mustard | plasma membrane | 72.87 | 72.87 |
| CDY58691 | Canola | plasma membrane | 72.65 | 72.49 |
| Bra035951.1-P | Field mustard | plasma membrane | 72.43 | 72.27 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 70.68 | 72.26 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 70.46 | 72.04 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 71.99 | 71.99 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 71.99 | 71.99 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 71.77 | 71.77 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 70.9 | 71.21 |
| EER90859 | Sorghum | extracellular | 66.08 | 71.06 |
| CDY70289 | Canola | extracellular | 61.71 | 71.03 |
| AT3G02210.1 | Thale cress | extracellular | 70.02 | 70.8 |
| AT3G29810.1 | Thale cress | extracellular | 68.27 | 70.75 |
| KRH18352 | Soybean | plasma membrane | 70.68 | 70.52 |
| CDY60470 | Canola | plasma membrane | 70.46 | 70.31 |
| CDY43250 | Canola | plasma membrane | 70.02 | 70.02 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 69.8 | 69.35 |
| Bra040587.1-P | Field mustard | extracellular | 66.52 | 69.25 |
| CDY42842 | Canola | cytosol | 17.94 | 67.21 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 12.47 | 67.06 |
| GSMUA_Achr4P03210_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 63.46 | 64.88 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 17.29 | 64.23 |
| GSMUA_Achr4P14440_001 | Banana | plasma membrane | 63.9 | 63.76 |
| Os10t0497700-01 | Rice | extracellular | 58.42 | 62.82 |
| KRH56778 | Soybean | extracellular | 28.23 | 61.72 |
| CDY29033 | Canola | cytosol | 23.63 | 59.34 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 28.67 | 57.46 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 28.45 | 57.27 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 34.79 | 56.99 |
| GSMUA_Achr4P27070_001 | Banana | cytosol | 50.33 | 55.56 |
| CDY14723 | Canola | cytosol | 28.45 | 40.88 |
| GSMUA_Achr8P10390_001 | Banana | cytosol | 12.69 | 23.2 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 28.01 | 19.19 |
| GSMUA_Achr4P33540_001 | Banana | vacuole | 26.91 | 18.5 |
| GSMUA_Achr3P21560_001 | Banana | plasma membrane | 26.26 | 18.29 |
| GSMUA_Achr11P... | Banana | plasma membrane | 26.48 | 17.9 |
Protein Annotations
| MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | EnsemblPlantsGene:GSMUA_Achr4G01440_001 |
| EnsemblPlants:GSMUA_Achr4P01440_001 | EnsemblPlants:GSMUA_Achr4T01440_001 | UniProt:M0SK61 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF7 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000295DC81 | SEG:seg |
Description
COBRA-like protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01440_001]
Coordinates
chr4:-:1212077..1217529
Molecular Weight (calculated)
50826.8 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.138
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSSRSIF GGSVGKLAPL AISLLFFLVL AALIPSTEAY DSLDPNGNIT IKWDIMQWTP DGYVAVVTMF NFQQYRHIQA PGWTLGWTWA KKEVIWSMVG
101: AQTTEQGDCS RFKGNTPHCC KKDPTVVDLL PGTPYNQQIA NCCKGGVINS WVQDPANAAS SFQVSVGAAG TTNKTVRVPK NFTLRAPGPG YTCGIAKIVK
201: PTKFVTQDGR RTTQALMTWN VTCTYSQFLA QKTPTCCVSL SSFYNDTIVN CPTCTCGCQN NATQPGSCVE GDSPYLASAV NGPGKNSFTP LVQCTSHMCP
301: VRVHWHVKLN YKEYWRVKIA ITNFNYRMNY TQWNLVIQHP NLDNLTQLFS FNYKSLTPYG GINDTAMLWG VKYYNDLLME AGPYGNVQSE LLFKKDPSTF
401: TFEKGWAFPR RIYFNGDNCV MPPPDSYPWL PNAASQLMST STMTLLTALS WLLIYCV
101: AQTTEQGDCS RFKGNTPHCC KKDPTVVDLL PGTPYNQQIA NCCKGGVINS WVQDPANAAS SFQVSVGAAG TTNKTVRVPK NFTLRAPGPG YTCGIAKIVK
201: PTKFVTQDGR RTTQALMTWN VTCTYSQFLA QKTPTCCVSL SSFYNDTIVN CPTCTCGCQN NATQPGSCVE GDSPYLASAV NGPGKNSFTP LVQCTSHMCP
301: VRVHWHVKLN YKEYWRVKIA ITNFNYRMNY TQWNLVIQHP NLDNLTQLFS FNYKSLTPYG GINDTAMLWG VKYYNDLLME AGPYGNVQSE LLFKKDPSTF
401: TFEKGWAFPR RIYFNGDNCV MPPPDSYPWL PNAASQLMST STMTLLTALS WLLIYCV
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.