Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G418400.1 | Wheat | extracellular | 98.43 | 98.43 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 97.54 | 97.54 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 83.45 | 81.62 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 81.66 | 80.75 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 80.98 | 80.62 |
| Zm00001d013256_P001 | Maize | extracellular | 80.76 | 80.4 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 29.31 | 79.88 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 72.93 | 71.49 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 69.57 | 71.33 |
| KRH72178 | Soybean | mitochondrion | 58.84 | 71.27 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 72.26 | 70.68 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 72.04 | 70.31 |
| Solyc02g065770.2.1 | Tomato | extracellular | 69.8 | 70.27 |
| PGSC0003DMT400068328 | Potato | extracellular | 69.35 | 69.82 |
| CDX86358 | Canola | extracellular | 68.01 | 69.72 |
| Bra025406.1-P | Field mustard | extracellular | 68.01 | 69.72 |
| CDX85277 | Canola | extracellular | 67.79 | 69.5 |
| PGSC0003DMT400003470 | Potato | extracellular | 69.13 | 69.13 |
| CDY70289 | Canola | extracellular | 61.3 | 69.02 |
| Solyc02g089120.2.1 | Tomato | extracellular | 68.68 | 68.68 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 68.46 | 68.3 |
| KRH54735 | Soybean | endoplasmic reticulum | 69.57 | 68.2 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 68.01 | 67.86 |
| KRH03165 | Soybean | extracellular | 68.9 | 67.84 |
| AT3G29810.1 | Thale cress | extracellular | 66.67 | 67.57 |
| KRH63181 | Soybean | endoplasmic reticulum | 68.9 | 67.54 |
| Bra040587.1-P | Field mustard | extracellular | 66.22 | 67.43 |
| KRG93684 | Soybean | extracellular, vacuole | 67.34 | 66.3 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 70.47 | 66.04 |
| KRH18352 | Soybean | plasma membrane | 67.34 | 65.72 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 66.44 | 65.13 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 65.77 | 64.9 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 66.67 | 64.78 |
| CDX87193 | Canola | plasma membrane | 65.77 | 64.47 |
| CDY58691 | Canola | plasma membrane | 65.77 | 64.19 |
| CDY16831 | Canola | plasma membrane | 65.77 | 64.19 |
| CDY02184 | Canola | plasma membrane | 65.55 | 64.11 |
| Bra012996.1-P | Field mustard | plasma membrane | 65.32 | 63.9 |
| Bra035951.1-P | Field mustard | plasma membrane | 65.1 | 63.54 |
| AT3G02210.1 | Thale cress | extracellular | 64.21 | 63.5 |
| Os10t0497700-01 | Rice | extracellular | 59.96 | 63.06 |
| TraesCS3A01G409900.1 | Wheat | plastid | 38.7 | 62.45 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 63.53 | 62.42 |
| CDY60470 | Canola | plasma membrane | 63.76 | 62.23 |
| CDY43250 | Canola | plasma membrane | 63.53 | 62.14 |
| TraesCS5A01G095200.1 | Wheat | extracellular | 61.3 | 61.02 |
| TraesCS2A01G175000.1 | Wheat | plasma membrane | 59.96 | 59.69 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 10.96 | 57.65 |
| CDY42842 | Canola | cytosol | 15.66 | 57.38 |
| KRH56778 | Soybean | extracellular | 26.4 | 56.46 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 14.99 | 54.47 |
| CDY29033 | Canola | cytosol | 21.03 | 51.65 |
| TraesCS2A01G388600.1 | Wheat | extracellular, plasma membrane | 40.49 | 48.53 |
| TraesCS6A01G158000.1 | Wheat | endoplasmic reticulum | 34.9 | 44.83 |
| TraesCS6A01G330900.1 | Wheat | extracellular, plasma membrane | 41.61 | 44.71 |
| CDY14723 | Canola | cytosol | 26.4 | 37.11 |
| TraesCS4A01G117100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 27.96 | 18.57 |
| TraesCS7A01G136600.1 | Wheat | mitochondrion | 27.52 | 18.25 |
| TraesCS2A01G092900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 26.62 | 17.2 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G379800.1 | EnsemblPlantsGene:TraesCS6A01G379800 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SEG:seg |
| SignalP:SignalP-noTM | MapMan:21.1.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:600403258..600406136
Molecular Weight (calculated)
49871.6 Da
IEP (calculated)
8.578
GRAVY (calculated)
-0.251
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALSGCALL LAAALLLSAP AATEAYDSLD PNGNITIKWD LKEWTPDGYV AMVTIYNYQQ FRHISAPGWQ LGWTWAKKEV IWSMVGAQTT EQGDCSKFKT
101: NPPHCCKRDP TIIDLLPGTP YKDQVGNCCK GGVISTFNQD PANAASSFQI SVGLSGTTNK TVKLPRNFTL KTPGPGYTCG RATVVRPTKF LIGDGRRTTQ
201: ALMTWNVTCT YSQFLAQKTP TCCVALSSFY NNTIVGCPTC SCGCQNNNTH PGSCVNPNSP YLQSAIDGPG KYTGQPLVQC TSHMCPVKVH WHVKLNYKDY
301: WRVKVTITNF NYRMNYTDWN LVVQHPNFNN ITKLFSFNYK PLSPYGGRIN DSAMFWGMKF YNDLLNQAGP FGNAQTEILL QKDPETFTFE KGWAFPRRVY
401: FNGDNCVMPP PDAYPWLPNA SPPMKQPWTL ELLVFWTALA ALLAYYV
101: NPPHCCKRDP TIIDLLPGTP YKDQVGNCCK GGVISTFNQD PANAASSFQI SVGLSGTTNK TVKLPRNFTL KTPGPGYTCG RATVVRPTKF LIGDGRRTTQ
201: ALMTWNVTCT YSQFLAQKTP TCCVALSSFY NNTIVGCPTC SCGCQNNNTH PGSCVNPNSP YLQSAIDGPG KYTGQPLVQC TSHMCPVKVH WHVKLNYKDY
301: WRVKVTITNF NYRMNYTDWN LVVQHPNFNN ITKLFSFNYK PLSPYGGRIN DSAMFWGMKF YNDLLNQAGP FGNAQTEILL QKDPETFTFE KGWAFPRRVY
401: FNGDNCVMPP PDAYPWLPNA SPPMKQPWTL ELLVFWTALA ALLAYYV
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.