Factsheet for TraesCS6A01G330900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G361700.1	Wheat	plastid	48.8	91.86
TraesCS6A01G158000.1	Wheat	endoplasmic reticulum	53.61	64.08
TraesCS2A01G388600.1	Wheat	extracellular, plasma membrane	47.36	52.81
GSMUA_Achr4P27070_001	Banana	cytosol	50.96	51.21
VIT_12s0035g00630.t01	Wine grape	extracellular, plasma membrane	47.36	45.71
Bra030800.1-P	Field mustard	cytosol	45.67	45.56
Solyc01g103860.2.1	Tomato	cytosol	46.15	45.39
CDX93481	Canola	plasma membrane	46.15	43.74
CDY31063	Canola	plasma membrane	45.43	43.55
Bra019992.1-P	Field mustard	cytosol	41.35	43.32
TraesCS5A01G095200.1	Wheat	extracellular	46.39	42.98
AT1G09790.1	Thale cress	plasma membrane	46.88	42.95
CDY20671	Canola	extracellular, plasma membrane, vacuole	45.91	41.98
TraesCS6A01G379800.1	Wheat	extracellular	44.71	41.61
TraesCS2A01G175000.1	Wheat	plasma membrane	44.71	41.43
TraesCS2A01G175100.1	Wheat	extracellular	44.23	40.62
TraesCS3A01G409900.1	Wheat	plastid	26.92	40.43
TraesCS4A01G231200.1	Wheat	extracellular	43.75	39.57
TraesCS5A01G392000.1	Wheat	endoplasmic reticulum, extracellular, golgi	43.27	39.39
CDX94950	Canola	nucleus	43.75	31.93
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	24.04	14.86
TraesCS7A01G136600.1	Wheat	mitochondrion	23.32	14.39
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	23.32	14.02

Protein Annotations

EnsemblPlants:TraesCS6A01G330900.1	EnsemblPlantsGene:TraesCS6A01G330900	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF12	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:21.1.2.2	:	:	:

Description

No Description!

Coordinates

chr6A:-:563262748..563276042

Molecular Weight (calculated)

46491.6 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.140

Length

416 amino acids

Sequence
(BLAST)

001: MEMEKWAAGR RMALILVLLC CVFGGDAYDV LDPTGNITIS WDFQEIKVLV SLHNYQLYRH VEDPGWRLSW FWAGDEVIYD TTGAEATEQG NCSLFVGAHS
101: CEKHPVMVDL ARGVPYARQV DHCCRGGVLS SLTQNSEAAT SAFLMHVGNF KSSSDGIPQK PFNFSLGVPG YRCSNATMVA PTRTRIGKHR HVQALMTWQA
201: TCFYSQTAVG PFRACCVSLP TFYSRTIVEC PHCTCGACPA GTSTAPQCQD AEIRCTGHMC PIRVHWHVKK SYTEYWRVKL SINNFNRFKN YSDWNIVVQH
301: PSLQELTQVF SFAYEPLVQR GTINDTGLFW GLPRFNQMLP QDGTVQTEVL LRKGKDFSFS GGWALPRKIY FDGSECAMPP PDDFPQLPSS SPVQRFSGGH
401: RWLASGAVLV LGLLLT

Best Arabidopsis Sequence Match ( AT1G09790.1 )
(BLAST)

001: MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT
101: EQGNCSAFAS SGNLPHCCLE RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF DIGVPGYSCD NATSVSPTKF
201: STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
301: NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF
401: PRRILFNGDE CVMPSPDDFP RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV

Arabidopsis Description

COBL6COBRA-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04500]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.