CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64878	Soybean	plastid	86.08	87.12
VIT_08s0058g01450.t01	Wine grape	cytosol	66.8	85.93
KRH00472	Soybean	plastid	72.96	73.11
CDY11174	Canola	plastid	67.0	71.4
Bra005663.1-P	Field mustard	plastid	66.8	71.19
CDY61602	Canola	plastid	65.61	69.92
AT5G01920.1	Thale cress	plastid	67.79	68.89
Solyc10g085680.1.1	Tomato	plastid	64.81	65.59
PGSC0003DMT400021664	Potato	plastid	64.81	65.2
OQU78190	Sorghum	plastid	62.03	54.17
Os05t0480000-01	Rice	plastid	61.43	52.28
TraesCS1B01G311200.1	Wheat	plastid	60.84	51.26
TraesCS1A01G301400.1	Wheat	plastid	60.44	51.09
TraesCS1D01G301100.1	Wheat	plastid	60.04	50.59
GSMUA_Achr7P22000_001	Banana	extracellular	63.22	50.08
HORVU1Hr1G069560.1	Barley	plastid	60.84	48.73
KRH70612	Soybean	plastid	36.38	31.5
KRH75488	Soybean	plastid	35.79	31.2
Zm00001d038485_P001	Maize	plastid	62.23	25.55

Protein Annotations

MapMan:1.1.1.4.1.2	Gene3D:1.10.510.10	EntrezGene:100788727	MapMan:18.4.3.8	Gene3D:3.30.200.20	EMBL:ACUP02010282
EnsemblPlantsGene:GLYMA_16G220200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	UniProt:I1MQP1	InterPro:IPR000719	EnsemblPlants:KRH09551
ProteinID:KRH09551	ProteinID:KRH09551.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR11584	PANTHER:PTHR11584:SF316	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000233B4C4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:37737100..37741223

Molecular Weight (calculated)

55852.4 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.237

Length

503 amino acids

Sequence
(BLAST)

001: MASLLLPPTP TATSSTVKHN KIQTKLKPNS NAHAATCNFF LSSNSNANHR FNSAKCHALL DDVAKGLLES SSSVGVDQFQ RLTEGLSHMQ RWEILVFGGL
101: TWIYLTARPG VLVGAIDAYL LAPLQLGLDN LSGRRNLKRS DFVVGDKLGE GSFGVVYSGI LVPKNVDLDV VQKRGRGKTT QVDAKSKDKV ILKKVKVGIQ
201: GAEEFGDYEE WFNYRLSRAA PETCADFLGT FVADQTNSQF TKGGKWLVWK FEGDRTLADY MKDRNFPSNL ESVMFGRVLQ GVDSSKRNAL IIKQIMRQII
301: TSLRKIHDTG IVHRDVKPAN LVVTKRGQIK LIDFGAATDL RIGKNYVPNR TLLDPDYCPP ELYVLPEETP SPPPEPIAAF LSPILWQLNS PDLFDMYSAG
401: IVLLQMAIPS LRSPAALKNF NLELKTCGYD LKKWRDYTRL RPDFQILDSE SGRGWDLATK LVSERGSLRR GRLSAAAALR HPYFLLGGDQ AAAVLSKLSL
501: NRK

Best Arabidopsis Sequence Match ( AT5G01920.2 )
(BLAST)

001: MASLLSPATP TATSAAFHSC STAGFSTPTH ISSQNSSLSL LSRRGCMMRC SFSPQDIPVD SLSHLPPFLD FQNSLATFSD TQKWGFFVSA GIVWFYLTAR
101: PGVLIGAIDA YLLAPLQLGL DTLIGRRLKR SDFLVTEKLG EGSFGVVYAG VLLPKNSTLV DDVRVSKARA KAMDFTGEFK QRVILKKVKV GVRGAEEFGE
201: YEEWFNYRLS RAAPDTCAEF LGSFVADKTN TMFTKGGKWL VWRFEGDRDL ADYMKDRSFP SNLESIMFGR VLQGVESVKR RALIIKQIMR QIITSLRKIH
301: GTGIVHRDVK PANLVVTKKG QIKLIDFGAA ADLRIGKNYI PERTLLDPDY CPPELYVLPE ETPSPPPEPI AALLSPILWQ LNSPDLFDMY SAGIVLLQMA
401: VPTLRSTAGL KNFNLEIKSV EYDLNRWRER TRTRPDLSIL DLDSGRGWDL VTKLISERGS LRRGRLSAAA ALRHPYFLLG GDQAAAVLSK LSFSK

Arabidopsis Description

STN8Serine/threonine-protein kinase STN8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.