Factsheet for Zm00001d038485_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78190	Sorghum	plastid	40.08	85.24
VIT_08s0058g01450.t01	Wine grape	cytosol	24.24	75.96
Os05t0480000-01	Rice	plastid	33.55	69.54
TraesCS1B01G311200.1	Wheat	plastid	33.06	67.84
TraesCS1A01G301400.1	Wheat	plastid	32.9	67.73
TraesCS1D01G301100.1	Wheat	plastid	32.65	67.0
HORVU1Hr1G069560.1	Barley	plastid	33.71	65.76
Bra005663.1-P	Field mustard	plastid	24.33	63.14
CDY11174	Canola	plastid	24.16	62.71
KRH09551	Soybean	nucleus	25.55	62.23
CDY61602	Canola	plastid	23.84	61.86
KRH64878	Soybean	plastid	25.06	61.77
Solyc10g085680.1.1	Tomato	plastid	24.9	61.37
AT5G01920.1	Thale cress	plastid	24.57	60.81
PGSC0003DMT400021664	Potato	plastid	24.82	60.8
KRH00472	Soybean	plastid	24.16	58.96
GSMUA_Achr7P22000_001	Banana	extracellular	25.06	48.35
Zm00001d038894_P002	Maize	plastid	13.22	27.41

Protein Annotations

MapMan:1.1.1.4.1.2	Gene3D:1.10.510.10	MapMan:18.4.3.8	Gene3D:3.30.200.20	UniProt:A0A1D6M6M1	ProteinID:AQK86724.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	InterPro:Malectin-like_Carb-bd_dom	PFAM:PF00069	PFAM:PF12819	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27003	PANTHER:PTHR27003:SF247	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000842B742	EnsemblPlantsGene:Zm00001d038485
EnsemblPlants:Zm00001d038485_P001	EnsemblPlants:Zm00001d038485_T001	SEG:seg	:	:	:

Description

Serine/threonine-protein kinase STN8 chloroplastic

Coordinates

chr6:+:158494145..158500979

Molecular Weight (calculated)

133282.0 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.109

Length

1225 amino acids

Sequence
(BLAST)

0001: MIIDAIDWLV LSTTEKVRNI YDDLFEVPSK VMQTAITPRD ATSSINFYWN SKGSSLGYIP VFHFSEVLQA GAGVVRQFNI NINGKRFTSH DYYTPRHLES
0101: GYVYGTRPYT NQIRYNVSIV KTDTSTLPPI INADEIFIVI STTNVGTDSE DGTWDGLTCS YAISDPPKIT ALNMSFSGLT GDISSAFANL KAVQSFYADN
0201: PDLCTNAGDS CQTAPQGKSK LVIYYVAVPM ALIVVALAVL LCCLLRRRKT RGLADVSVKP RDKTPTSLAS MAADEHRLSS LRLENRRFTY EDLEMITDSF
0301: KRVIGRGGFG YVYEGFLEDG TQVAVKMRSQ SSNQGAKEFL TEAQILTRIH HKNLVSMVGY CKDGVYMALV YEYMSEGSLQ EHIAGKRLTW GQRLRIALES
0401: AQGLEYLHRG CNPPLIHRDV KTSNILLNAK LEAKVADFGM SKALDRDTYA STNTLVGTPG YVDPEYLETM QPSTKSDVYS FGVVLLELVT GRPPILHSPQ
0501: PTSVIQWARQ HLARGDIEVV VDASMGGNHD VNSVWKAAEV ALQCTEQASA QRPTMGDVVA QLLECLDLEK GRSANESFCD GDDSGSATAS LSHSSAFVTG
0601: RIFGTVPMVE TGPATRRALV CVSLSPLSPL PRARLPSAPP WDESAFLAMA ASHLPPAATL VKKYPTLLHP FGAKPHAQRL IFRCRATSSE GADDGWASFV
0701: DELKRSLQVD PSDAVISNAG AGLTSNNDLV TALPLEPSAG PAAGDATTAA AGAVSELLGV DASGAVATPD RLLSSLLHLD ASNPVASVAG GALSRLDALT
0801: SGLSDAQRWA LFGFLAATWL YLTARPGVLS GAVDMYVLAP LQLALDSVLG RRSLKMSDFV VGERIGEGSF GVVYAGAVVP KNGAVVEERS GKAKTSLQND
0901: DRYKEKVILK KIKVMTVGAK ECGDYEEWFN YRVSRAAPES CADFLGSFVA DKNKAEFVKG GKWLVWKFEG DRTLANYLSE RGFPSNLERL MFGRVLQGLG
1001: PLEREALVVK QVMRQLITSL KRIHATGIVH RDIKPSNLVV TRRGQVKLID FGAATDLRIG KNYVPDRALL DPDYCPPELY VLPEETPEPP PEPIAAILSP
1101: ILWQQQPSLQ LNSPDLFDMY SAGIVLMQMA IPTLRTQSGL KNFNAELRSA GYDLNRWRQS ARRRPDLQIL DLDSGRGWDL ATKLISERGA NGGGRLSAAA
1201: ALRHPYFLLG GDQAAAVLSK FSLSK

Best Arabidopsis Sequence Match ( AT5G01920.2 )
(BLAST)

001: MASLLSPATP TATSAAFHSC STAGFSTPTH ISSQNSSLSL LSRRGCMMRC SFSPQDIPVD SLSHLPPFLD FQNSLATFSD TQKWGFFVSA GIVWFYLTAR
101: PGVLIGAIDA YLLAPLQLGL DTLIGRRLKR SDFLVTEKLG EGSFGVVYAG VLLPKNSTLV DDVRVSKARA KAMDFTGEFK QRVILKKVKV GVRGAEEFGE
201: YEEWFNYRLS RAAPDTCAEF LGSFVADKTN TMFTKGGKWL VWRFEGDRDL ADYMKDRSFP SNLESIMFGR VLQGVESVKR RALIIKQIMR QIITSLRKIH
301: GTGIVHRDVK PANLVVTKKG QIKLIDFGAA ADLRIGKNYI PERTLLDPDY CPPELYVLPE ETPSPPPEPI AALLSPILWQ LNSPDLFDMY SAGIVLLQMA
401: VPTLRSTAGL KNFNLEIKSV EYDLNRWRER TRTRPDLSIL DLDSGRGWDL VTKLISERGS LRRGRLSAAA ALRHPYFLLG GDQAAAVLSK LSFSK

Arabidopsis Description

STN8Serine/threonine-protein kinase STN8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.