Factsheet for PGSC0003DMT400021664

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085680.1.1	Tomato	plastid	97.4	97.99
VIT_08s0058g01450.t01	Wine grape	cytosol	63.4	81.07
CDY11174	Canola	plastid	64.6	68.43
CDY61602	Canola	plastid	64.6	68.43
Bra005663.1-P	Field mustard	plastid	63.8	67.58
AT5G01920.1	Thale cress	plastid	65.0	65.66
KRH64878	Soybean	plastid	65.0	65.39
KRH09551	Soybean	nucleus	65.2	64.81
KRH00472	Soybean	plastid	63.8	63.55
OQU78190	Sorghum	plastid	60.0	52.08
Os05t0480000-01	Rice	plastid	60.4	51.1
TraesCS1B01G311200.1	Wheat	plastid	60.0	50.25
TraesCS1A01G301400.1	Wheat	plastid	59.6	50.08
TraesCS1D01G301100.1	Wheat	plastid	59.2	49.58
GSMUA_Achr7P22000_001	Banana	extracellular	61.8	48.66
HORVU1Hr1G069560.1	Barley	plastid	60.4	48.09
PGSC0003DMT400016911	Potato	plasma membrane	32.2	32.53
Zm00001d038485_P001	Maize	plastid	60.8	24.82

Protein Annotations

MapMan:1.1.1.4.1.2	Gene3D:1.10.510.10	EntrezGene:102590921	MapMan:18.4.3.8	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1AFI4	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400008404	PGSC:PGSC0003DMG400008404	EnsemblPlants:PGSC0003DMT400021664	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR11584	PANTHER:PTHR11584:SF316	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296EDD0	RefSeq:XP_006338929.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008404]

Coordinates

chr10:+:53205389..53209633

Molecular Weight (calculated)

55814.3 Da

IEP (calculated)

9.006

GRAVY (calculated)

-0.157

Length

500 amino acids

Sequence
(BLAST)

001: MASLFSPSPT AATTFHQDPN LICYSPLRPI SKSYYFWSCT NHSKRNNTIT CSSFVDEISV SLDNSLSQFP VFQSGYAQFE KFTGELPEEQ KLGLLIFAGI
101: TWIYLTARPG VLLGAIDAYI LAPIQLGLDS LSGKRNFKMK DFLIGERLGE GSFGIVYSGV IVPKNVNLDD IVRKRGSSVK SVITDSRFKE KVILKQVKIG
201: VQGAAECGEF EEWFNYRLSR AAPETCADFL GSFVAEKTNS RYTKGEKWLV WKFEGDRDLG DYMKDRGFPL NIESVMFGRV LQGLDSIQRN ALIIKQIMRQ
301: IITSLKKIHD TGIVHRDVKP SNLVVTKKGQ IKLIDFGAAT DLRIGKNYVP DKGLLDPDYC PPELYVMPEE TPKPPAEPVA ALLSPFLWQL NSPDLFDTYS
401: AGIVLMQMAV PSLRSTAGLK NFNMELNAVG YDLNNWRERT RTRPDLSILD LDSGRGWDLA TKLISERGRR LSAAAALRHP YFLLGGDQAA AVLSKLSFSK

Best Arabidopsis Sequence Match ( AT5G01920.2 )
(BLAST)

001: MASLLSPATP TATSAAFHSC STAGFSTPTH ISSQNSSLSL LSRRGCMMRC SFSPQDIPVD SLSHLPPFLD FQNSLATFSD TQKWGFFVSA GIVWFYLTAR
101: PGVLIGAIDA YLLAPLQLGL DTLIGRRLKR SDFLVTEKLG EGSFGVVYAG VLLPKNSTLV DDVRVSKARA KAMDFTGEFK QRVILKKVKV GVRGAEEFGE
201: YEEWFNYRLS RAAPDTCAEF LGSFVADKTN TMFTKGGKWL VWRFEGDRDL ADYMKDRSFP SNLESIMFGR VLQGVESVKR RALIIKQIMR QIITSLRKIH
301: GTGIVHRDVK PANLVVTKKG QIKLIDFGAA ADLRIGKNYI PERTLLDPDY CPPELYVLPE ETPSPPPEPI AALLSPILWQ LNSPDLFDMY SAGIVLLQMA
401: VPTLRSTAGL KNFNLEIKSV EYDLNRWRER TRTRPDLSIL DLDSGRGWDL VTKLISERGS LRRGRLSAAA ALRHPYFLLG GDQAAAVLSK LSFSK

Arabidopsis Description

STN8Serine/threonine-protein kinase STN8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.