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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73614 Soybean endoplasmic reticulum 96.74 96.74
KRH14516 Soybean cytosol 48.84 77.21
KRH73613 Soybean cytosol 59.07 76.51
VIT_12s0028g00930.t01 Wine grape cytosol, endoplasmic reticulum 74.88 74.54
KRG98977 Soybean cytosol 60.93 72.78
VIT_12s0028g00920.t01 Wine grape cytosol 72.56 72.56
KRH46010 Soybean cytosol 70.7 70.37
KRH46009 Soybean cytosol 69.77 69.77
KRG98976 Soybean cytosol, endoplasmic reticulum, mitochondrion 69.3 69.3
KRG98975 Soybean cytosol 57.67 65.61
CDY29636 Canola cytosol 62.79 62.79
CDX97788 Canola cytosol 62.79 62.79
CDY23980 Canola cytosol 62.33 62.33
Bra022815.1-P Field mustard cytosol 62.33 62.33
CDX84816 Canola cytosol 62.33 62.33
Bra021673.1-P Field mustard cytosol, mitochondrion 61.86 61.86
AT2G30860.1 Thale cress cytosol 61.4 61.4
AT2G30870.1 Thale cress endoplasmic reticulum, vacuole 59.07 59.07
Bra022816.1-P Field mustard endoplasmic reticulum 58.6 58.6
CDX84815 Canola cytosol, endoplasmic reticulum 58.14 58.14
CDY23979 Canola endoplasmic reticulum 58.14 58.14
KRH30892 Soybean cytosol 51.63 52.11
KRG97999 Soybean cytosol 50.7 51.17
KRH31902 Soybean cytosol 43.72 43.12
KRH71551 Soybean cytosol 43.72 42.73
KRH71552 Soybean cytosol 39.07 38.53
Protein Annotations
KEGG:00480+2.5.1.18KEGG:00980+2.5.1.18KEGG:00982+2.5.1.18KEGG:00983+2.5.1.18Gene3D:1.20.1050.10MapMan:18.8.1.5
Gene3D:3.40.30.10EntrezGene:547951MapMan:9.5.1.6.4EMBL:ACUP02008504EMBL:AF243379EnsemblPlantsGene:GLYMA_14G031000
GO:GO:0003674GO:GO:0003824GO:GO:0004364GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006749GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016740InterPro:GST_CInterPro:GST_Phi_CInterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987EMBL:KM818403EnsemblPlants:KRH14517ProteinID:KRH14517
ProteinID:KRH14517.1PFAM:PF00043PFAM:PF02798PFscan:PS50404PFscan:PS50405PANTHER:PTHR43900
PANTHER:PTHR43900:SF15MetaCyc:PWY-4061MetaCyc:PWY-6842MetaCyc:PWY-7112MetaCyc:PWY-7533UniProt:Q9FQD4
SUPFAM:SSF47616SUPFAM:SSF52833InterPro:Thioredoxin-like_sfUniParc:UPI00000A452ASEG:seg:
Description
hypothetical protein
Coordinates
chr14:+:2247815..2249508
Molecular Weight (calculated)
24773.8 Da
IEP (calculated)
5.967
GRAVY (calculated)
-0.243
Length
215 amino acids
Sequence
(BLAST)
001: MAVKVYGPHC ASTKRVLVCL VEKEVEFEVV PVDVTKGEQK DPEYLKLQPF GVVPVIKDGD YTLYESRAIM RYYAEKYRSQ GVELLGKTIE ERGLVEQWLE
101: VEAHNFHPQA YNLCLHGLFG SLFGVTPDPK VIEESEAKLV QVLNIYEERL SKTKYLAGDF FSIADISHLP FLDYVVNNMG KKYLLEERKH VGAWWDDISS
201: RPSWNKVLQL YRAPI
Best Arabidopsis Sequence Match ( AT2G30860.1 )
(BLAST)
001: MVLKVYGPHF ASPKRALVTL IEKGVAFETI PVDLMKGEHK QPAYLALQPF GTVPAVVDGD YKIFESRAVM RYVAEKYRSQ GPDLLGKTVE DRGQVEQWLD
101: VEATTYHPPL LNLTLHIMFA SVMGFPSDEK LIKESEEKLA GVLDVYEAHL SKSKYLAGDF VSLADLAHLP FTDYLVGPIG KAYMIKDRKH VSAWWDDISS
201: RPAWKETVAK YSFPA
Arabidopsis Description
GSTF9GSTF9 [Source:UniProtKB/TrEMBL;Acc:A0A178VP05]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.