Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 5
  • nucleus 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d002891_P001 Maize cytosol 43.01 76.4
Os04t0687300-01 Rice mitochondrion 67.83 70.8
TraesCS2D01G587300.1 Wheat mitochondrion, nucleus 65.73 68.86
TraesCS2B01G610800.1 Wheat mitochondrion, nucleus 64.69 67.77
TraesCS2A01G576600.1 Wheat nucleus 64.69 67.52
HORVU2Hr1G124560.2 Barley cytosol, nucleus, plastid 62.94 59.6
GSMUA_Achr8P07930_001 Banana nucleus 37.76 48.21
KRH38185 Soybean cytosol, nucleus 20.63 41.84
KRH53847 Soybean nucleus 25.52 35.96
VIT_04s0044g00490.t01 Wine grape mitochondrion 32.17 32.28
Solyc11g005400.1.1 Tomato mitochondrion 30.77 31.43
KRH38183 Soybean extracellular, plasma membrane 31.82 31.16
KXG21031 Sorghum plastid 25.87 30.96
PGSC0003DMT400010185 Potato mitochondrion 30.07 30.71
KRH64103 Soybean mitochondrion 26.92 25.84
KXG36196 Sorghum plastid 22.73 25.29
AT2G18465.1 Thale cress mitochondrion, nucleus, plastid 22.38 23.88
Protein Annotations
EnsemblPlants:KXG27496EnsemblPlantsGene:SORBI_3006G277000Gene3D:1.10.287.110InterPro:DnaJ_domainInterPro:IPR001623InterPro:IPR036869
InterPro:J_dom_sfPANTHER:PTHR45376PFAM:PF00226PFscan:PS50076ProteinID:KXG27496ProteinID:KXG27496.1
SEG:segSMART:SM00271SUPFAM:SSF46565unigene:Sbi.7686UniParc:UPI00081AE815UniProt:A0A1B6PPB1
MapMan:35.2:::::
Description
hypothetical protein
Coordinates
chr6:-:60779344..60782767
Molecular Weight (calculated)
32493.9 Da
IEP (calculated)
10.320
GRAVY (calculated)
-0.898
Length
286 amino acids
Sequence
(BLAST)
001: MQAAAASPWT MKTLPMLGNH LRDPTRLAGA SSSFHSTPAS FAKWRNKWDC HKSEKGARKA SRNYERYVVR QKRAEGKKAL KDYLLYGKSS PHLQDGSTGS
101: FANSHAIPRF KTFRKGPQTH WSSKSQQSVH NQRKSKKDKE RFCNFFHEDR YVHPDDIFEA IFGAHHGFTW SHISWEGFHF GDKSFKFRWS GGESRKQRIP
201: SDSEDEESEG NESRETTSVG SHAHRVILGL PPCGPLTLED VKTAFRASAL RWHPDRHPGS SQAMAEEKFK LCVNAYNSLC SVLKAA
Best Arabidopsis Sequence Match ( AT3G58020.1 )
(BLAST)
001: MMAAIRAAIL KPQDYYSHLK TALFHSTPIL QRKHQSNSKA RSKRFGRKKA KQDLRRNVNA FAQHLFGIWS DGFDYSGKHT SWFEKQYSRV SKRNRNGKTH
101: IPQHLDKRCF DFSEVDEGYQ IEYFLKTALG GSRGFSWSNT REGGTRSGRY SNNFRKSWGS RYRLDEEEEE EEEEYEYSST GVSDTEPNQE SHRQTLGLSS
201: SGPLNLEDVK IAYRACALKW HPDRHHTSTK NEAEEKFKLC TVAYQSLCEK LAMN
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RXJ5]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.