CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38185	Soybean	cytosol, nucleus	37.92	80.14
KRH38183	Soybean	extracellular, plasma membrane	67.11	68.49
KRH53847	Soybean	nucleus	42.95	63.05
VIT_04s0044g00490.t01	Wine grape	mitochondrion	41.28	43.16
PGSC0003DMT400010185	Potato	mitochondrion	37.58	40.0
KRH67071	Soybean	extracellular, mitochondrion, plastid, vacuole	9.4	40.0
Solyc11g005400.1.1	Tomato	mitochondrion	37.25	39.64
KXG21031	Sorghum	plastid	25.5	31.8
TraesCS1B01G024600.1	Wheat	mitochondrion, plastid	24.83	31.76
Os05t0106500-01	Rice	mitochondrion	24.16	31.3
TraesCS1D01G020100.1	Wheat	mitochondrion	23.49	30.17
Os04t0687300-01	Rice	mitochondrion	27.18	29.56
AT2G18465.1	Thale cress	mitochondrion, nucleus, plastid	26.51	29.48
GSMUA_Achr8P07930_001	Banana	nucleus	22.15	29.46
Zm00001d002891_P001	Maize	cytosol	15.77	29.19
GSMUA_Achr8P17360_001	Banana	endoplasmic reticulum, extracellular	20.47	29.05
TraesCS2A01G576600.1	Wheat	nucleus	25.5	27.74
Zm00001d035721_P002	Maize	mitochondrion	24.5	27.65
TraesCS2B01G610800.1	Wheat	mitochondrion, nucleus	25.17	27.47
TraesCS2D01G587300.1	Wheat	mitochondrion, nucleus	25.17	27.47
KXG27496	Sorghum	nucleus	25.84	26.92
KRH38097	Soybean	cytosol	16.11	25.95
HORVU2Hr1G124560.2	Barley	cytosol, nucleus, plastid	25.17	24.83
HORVU1Hr1G002830.2	Barley	plastid	22.48	24.19
KRG95387	Soybean	plastid	20.47	24.02
KRH71846	Soybean	mitochondrion	17.45	21.58
TraesCS1A01G020600.1	Wheat	plastid	23.49	21.54

Protein Annotations

EMBL:ACUP02002739	EnsemblPlants:KRH64103	EnsemblPlantsGene:GLYMA_04G216300	EntrezGene:100526896	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR45376	ProteinID:KRH64103	ProteinID:KRH64103.1
SEG:seg	SUPFAM:SSF46565	UniParc:UPI0006ED72ED	UniProt:A0A0R0KB27	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:-:48755829..48765086

Molecular Weight (calculated)

34192.8 Da

IEP (calculated)

9.852

GRAVY (calculated)

-0.983

Length

298 amino acids

Sequence
(BLAST)

001: MQLARWPNLS SLKTHVIASV THFSQFHSTP CSCQKWNNKF NSDVKKGQQP SKNHIKFITR QKRADAKKAL NSLLYNNGAS KFSFEEKYGY QGRFSNKDQP
101: KSGQPKSGQH SGGKPQKKSK RKIRRESFSE DFDGHTEQIF QATFGNKWYT WSFNNWRSSS SEHSTSGFEW REHSNRTNKW KNESDTEHED DDSCCEGSSS
201: DRTVLGLPPT GPLKIEDVKN AFRLSALKWH PDKHQGPSQV DSQPSLLETQ YHLQTVFLGV GVKYNPSRTT ICVDPLDEYI LGTKVVDKYC RIGIIYFL

Best Arabidopsis Sequence Match ( AT2G18465.1 )
(BLAST)

001: MFRLRSLLSL KSSSIVELSS QNVTEAIRFA PFHSTSVLSE KSRSRFGSAR DSEGERSSKN SSIRFTCTVK EKGRTSAKKT VDKLLFHRGI NDPLQNEWHF
101: GPSPLIRDRH MKKKSPPGRG KKPRDKKTKR WHREGNPDDD FGTDANNTFE NKWRERWTAQ SQKASYSKDS TAGFEWREGW SWTTQSQRSK SWNKESFDEP
201: LNVEFRSERI VLGLPLDGPI KVDDVKNAFR SSALKWHPDK HQGPSQVAAQ EKFKLCVDAY KSLCSALA

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L763]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.