Factsheet for VIT_04s0044g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5
golgi 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38185	Soybean	cytosol, nucleus	31.93	64.54
KRH53847	Soybean	nucleus	36.14	50.74
PGSC0003DMT400010185	Potato	mitochondrion	47.72	48.57
Solyc11g005400.1.1	Tomato	mitochondrion	46.67	47.5
KRH38183	Soybean	extracellular, plasma membrane	47.72	46.58
KRH64103	Soybean	mitochondrion	43.16	41.28
Os04t0687300-01	Rice	mitochondrion	34.74	36.13
Zm00001d002891_P001	Maize	cytosol	20.0	35.4
GSMUA_Achr8P07930_001	Banana	nucleus	27.37	34.82
AT2G18465.1	Thale cress	mitochondrion, nucleus, plastid	32.28	34.33
TraesCS2D01G587300.1	Wheat	mitochondrion, nucleus	32.63	34.07
TraesCS2B01G610800.1	Wheat	mitochondrion, nucleus	32.63	34.07
TraesCS2A01G576600.1	Wheat	nucleus	32.63	33.94
GSMUA_Achr8P17360_001	Banana	endoplasmic reticulum, extracellular	24.56	33.33
KXG27496	Sorghum	nucleus	32.28	32.17
Os05t0106500-01	Rice	mitochondrion	25.26	31.3
KXG21031	Sorghum	plastid	25.96	30.96
TraesCS1B01G024600.1	Wheat	mitochondrion, plastid	25.26	30.9
HORVU2Hr1G124560.2	Barley	cytosol, nucleus, plastid	32.63	30.79
TraesCS1D01G020100.1	Wheat	mitochondrion	24.91	30.6
VIT_08s0007g06530.t01	Wine grape	plastid	27.37	29.89
Zm00001d035721_P002	Maize	mitochondrion	26.32	28.41
HORVU1Hr1G002830.2	Barley	plastid	24.91	25.63
TraesCS1A01G020600.1	Wheat	plastid	27.02	23.69

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100267710	wikigene:100267710	MapMan:35.2	ProteinID:CBI37608	ProteinID:CBI37608.3
UniProt:D7U432	InterPro:DnaJ_domain	EMBL:FN596506	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EntrezGene:LOC100267710	wikigene:LOC100267710	PFAM:PF00226	PFscan:PS50076	PANTHER:PTHR45376	SMART:SM00271
SUPFAM:SSF46565	TIGR:TC57586	UniParc:UPI0001983326	ArrayExpress:VIT_04s0044g00490	EnsemblPlantsGene:VIT_04s0044g00490	EnsemblPlants:VIT_04s0044g00490.t01
unigene:Vvi.903	RefSeq:XP_002282776	RefSeq:XP_002282776.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:21276992..21300325

Molecular Weight (calculated)

32811.6 Da

IEP (calculated)

10.360

GRAVY (calculated)

-1.090

Length

285 amino acids

Sequence
(BLAST)

001: MQVPRWRYVF ISKNSLTPFS IRAAISSSSH FASFHSTPVA SEKWKNKWNH DFTSHQPSKN YIRYASRQKR TDARRALKDL LFNNGSPKFS FQDEDSTWKI
101: DGASSWDEEA EHSDSSNKKG RPKSSNRRGR KAQHNRFRRK FRKDYFSEDD YSPETIFHAT FGNRNKWCTW SFNSAGSSSF QSSTSAFEWR GQSNRTNNRN
201: KEWDTGSETE SDGESCVVGS YSDRRMLGLP PTGPLKIEDV KNAFRLSALK WHPDKHQGPS QATAEEKFKL CVNAYKSLCN ALSTV

Best Arabidopsis Sequence Match ( AT2G18465.1 )
(BLAST)

001: MFRLRSLLSL KSSSIVELSS QNVTEAIRFA PFHSTSVLSE KSRSRFGSAR DSEGERSSKN SSIRFTCTVK EKGRTSAKKT VDKLLFHRGI NDPLQNEWHF
101: GPSPLIRDRH MKKKSPPGRG KKPRDKKTKR WHREGNPDDD FGTDANNTFE NKWRERWTAQ SQKASYSKDS TAGFEWREGW SWTTQSQRSK SWNKESFDEP
201: LNVEFRSERI VLGLPLDGPI KVDDVKNAFR SSALKWHPDK HQGPSQVAAQ EKFKLCVDAY KSLCSALA

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L763]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.