Factsheet for VIT_08s0007g06530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71846	Soybean	mitochondrion	54.02	58.51
KRG95387	Soybean	plastid	54.41	55.91
KRH38097	Soybean	cytosol	38.31	54.05
Solyc03g063350.2.1	Tomato	cytosol	34.1	47.34
CDX79893	Canola	mitochondrion, nucleus, plastid	45.21	45.56
Bra004669.1-P	Field mustard	mitochondrion, nucleus, plastid	45.59	45.42
GSMUA_Achr11P...	Banana	nucleus	36.02	44.98
Os07t0470800-00	Rice	mitochondrion	43.3	44.49
AT2G42080.1	Thale cress	mitochondrion, nucleus, plastid	44.83	44.49
TraesCS1B01G262100.2	Wheat	mitochondrion, nucleus, plastid	43.68	44.19
TraesCS1D01G251000.1	Wheat	mitochondrion	42.91	43.41
CDY06886	Canola	mitochondrion, nucleus, plastid	42.15	42.97
CDY65802	Canola	mitochondrion, nucleus, plastid	43.68	42.07
Zm00001d021350_P003	Maize	plastid	41.38	41.86
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	43.3	41.39
HORVU1Hr1G061530.1	Barley	plastid	43.3	41.24
KXG36196	Sorghum	plastid	40.23	40.86
AT3G58020.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	39.08	40.16
CDY06058	Canola	plastid	38.31	38.91
AT2G42065.1	Thale cress	plastid	29.12	36.19
CDX71980	Canola	plastid	30.65	35.4
Bra007374.1-P	Field mustard	cytosol	22.99	34.09
VIT_04s0044g00490.t01	Wine grape	mitochondrion	29.89	27.37
CDY14812	Canola	mitochondrion, nucleus, plastid	42.15	19.37
Bra016896.1-P	Field mustard	mitochondrion, nucleus, plastid	22.99	11.56

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100250423	wikigene:100250423	MapMan:35.2	EMBL:AM462377	ProteinID:CAN63574
ProteinID:CAN63574.1	ProteinID:CBI30013	ProteinID:CBI30013.3	UniProt:D7TID7	InterPro:DnaJ_domain	EMBL:FN595991
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100250423	wikigene:LOC100250423	PFAM:PF00226
PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR45376	SMART:SM00271	SUPFAM:SSF46565	TIGR:TC59261
UniParc:UPI00015CB2B8	ArrayExpress:VIT_08s0007g06530	EnsemblPlantsGene:VIT_08s0007g06530	EnsemblPlants:VIT_08s0007g06530.t01	unigene:Vvi.10898	RefSeq:XP_002279725
RefSeq:XP_002279725.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:20258210..20262858

Molecular Weight (calculated)

30016.5 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.984

Length

261 amino acids

Sequence
(BLAST)

001: MAMKAALINR NPNCTNLRTA LFHSTPVLDR RRRTHWNFGG GASRNSSQRF NYYARSRKLH AKQTLLRNVS AYAEYLFQSG QSDHDEDDGF SSKGPSWFRK
101: QYWDKGSKRD QGNAGPQSRS WRGFQFCEDD TEVETILRSA FGGSRTFYWS FINEENPQWG SSSGYRNNYR SSWNWRDRMD EEYGYSTDSD SSESDLASHR
201: MALGLSVSGP LKLEEVKNAY RTCALKWHPD RHQGASKAIA EEKFKLCSAA YQSLCDKLAV D

Best Arabidopsis Sequence Match ( AT2G42080.1 )
(BLAST)

001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:P93739]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.