CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06886	Canola	mitochondrion, nucleus, plastid	42.78	94.92
AT2G42080.1	Thale cress	mitochondrion, nucleus, plastid	32.39	69.96
CDX79893	Canola	mitochondrion, nucleus, plastid	30.63	67.18
CDY65802	Canola	mitochondrion, nucleus, plastid	32.04	67.16
Bra016896.1-P	Field mustard	mitochondrion, nucleus, plastid	52.64	57.61
KRH71846	Soybean	mitochondrion	18.31	43.15
KRG95387	Soybean	plastid	19.19	42.91
VIT_08s0007g06530.t01	Wine grape	plastid	19.37	42.15
CDY06058	Canola	plastid	19.01	42.02
Solyc03g063350.2.1	Tomato	cytosol	13.91	42.02
CDX71980	Canola	plastid	15.32	38.5
KRH38097	Soybean	cytosol	12.32	37.84
GSMUA_Achr11P...	Banana	nucleus	13.73	37.32
TraesCS1B01G262100.2	Wheat	mitochondrion, nucleus, plastid	16.02	35.27
TraesCS1D01G251000.1	Wheat	mitochondrion	15.85	34.88
Os07t0470800-00	Rice	mitochondrion	15.49	34.65
KXG36196	Sorghum	plastid	15.32	33.85
Zm00001d021350_P003	Maize	plastid	15.32	33.72
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	16.2	33.7
HORVU1Hr1G061530.1	Barley	plastid	15.85	32.85

Protein Annotations

EnsemblPlants:CDY14812	EnsemblPlantsGene:GSBRNA2T00084684001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	ncoils:Coil	PFAM:PF00226	PFscan:PS50076	ProteinID:CDY14812	ProteinID:CDY14812.1
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EF3171	UniProt:A0A078FPL1	MapMan:35.2

Description

BnaC04g48090DBnaC04g48090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPL1]

Coordinates

chrLK032047:-:511152..516763

Molecular Weight (calculated)

66284.4 Da

IEP (calculated)

8.446

GRAVY (calculated)

-1.131

Length

568 amino acids

Sequence
(BLAST)

001: MNAAVRAAIL RTQSVSSHLK AAFFHSTPVL ERKRGTSWDS KSNFHRKRFR RMREKQELLR NVNAFASNMF TSWHDEFDYK EPPSSQKRTS WFKKQYAKEP
101: KGKWNGKHGP RNFDFCEVDE DFDIDYIFPG GPRGFSFSFT FEDDEPPRWH HRDHSSSRSS RSKHHRIYEE DEDDYTTSTE SSDSESESEP NQASHRQALG
201: LSPSGPLNLK DVKHAYRVCA LKWHPDRHQG STKEAAEAKF KLCSVAYQSL CEKLGKSNAN KKNKRSKKFL REHQEKVRRA VEELKREREE AAAKKAKEAK
301: ENLNKCNQDS KSPRKSQFGY KDKDFDIIFR SLFGVPRGFD YSIYEEEDRR WWYHPSWFSG SSSNSWRSKY RFYDKDEEQE EELSEDEESN SSSNWWRSKS
401: RFDEKKKEEE DGYGSSKSNG SVLSDPIEAS HRETLGLSPW APLKIEDVKH AYRTCALKWH PDLHDDSTKA EAEAKFKLCV VAYQSLIQKL QSNFQFGSVL
501: SDPIEASHRE TLGLSPWAPL TLEDVKHAYR ACALKWHPDH HDDSTKAEAE AKFKFCNVAY ESLIKMLQ

Best Arabidopsis Sequence Match ( AT2G42080.1 )
(BLAST)

001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:P93739]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.