CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06058	Canola	plastid	79.2	69.65
AT3G58020.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	63.27	56.3
Bra007374.1-P	Field mustard	cytosol	26.99	34.66
CDY06886	Canola	mitochondrion, nucleus, plastid	38.05	33.59
CDY65802	Canola	mitochondrion, nucleus, plastid	39.38	32.84
CDX79893	Canola	mitochondrion, nucleus, plastid	36.28	31.66
KRG95387	Soybean	plastid	34.96	31.1
VIT_08s0007g06530.t01	Wine grape	plastid	35.4	30.65
KRH71846	Soybean	mitochondrion	31.86	29.88
KXG36196	Sorghum	plastid	32.74	28.79
Os07t0470800-00	Rice	mitochondrion	31.42	27.95
Zm00001d021350_P003	Maize	plastid	31.86	27.91
TraesCS1B01G262100.2	Wheat	mitochondrion, nucleus, plastid	31.42	27.52
TraesCS1D01G251000.1	Wheat	mitochondrion	30.53	26.74
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	31.42	26.01
KRH38097	Soybean	cytosol	21.24	25.95
HORVU1Hr1G061530.1	Barley	plastid	30.97	25.55
Solyc03g063350.2.1	Tomato	cytosol	20.8	25.0
GSMUA_Achr11P...	Banana	nucleus	22.12	23.92
CDY14812	Canola	mitochondrion, nucleus, plastid	38.5	15.32

Protein Annotations

EnsemblPlants:CDX71980	EnsemblPlantsGene:GSBRNA2T00155750001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil
PANTHER:PTHR45376	ProteinID:CDX71980	ProteinID:CDX71980.1	SEG:seg	SUPFAM:SSF46565	UniParc:UPI0004EDDDD1
MapMan:35.2	:	:	:	:	:

Description

BnaC08g28940D

Coordinates

chrLK031795:-:1615356..1616506

Molecular Weight (calculated)

26378.6 Da

IEP (calculated)

8.866

GRAVY (calculated)

-1.012

Length

226 amino acids

Sequence
(BLAST)

001: MIAAVRAAIL KPQGYSSNVK TAFLFHSTPI LQRKHKSNSE TRNKKLSRSR AKQDLRRNVN AFAEHLFGIW SDGFDYSEKR TSWFEKQYFR VCKRNRIGSR
101: YIHQRLDKSC FDFSGVDDEC EIEYFLRSAL GASYKERKSR QEEGEAHSWS WRQRVDQEEE KEEEEDKHSS TEVNDLDSSE QSHRQTLGLS SSGPLTLGDV
201: KNAYRLCALK WHPDLHHDST KVTNTI

Best Arabidopsis Sequence Match ( AT3G58020.1 )
(BLAST)

001: MMAAIRAAIL KPQDYYSHLK TALFHSTPIL QRKHQSNSKA RSKRFGRKKA KQDLRRNVNA FAQHLFGIWS DGFDYSGKHT SWFEKQYSRV SKRNRNGKTH
101: IPQHLDKRCF DFSEVDEGYQ IEYFLKTALG GSRGFSWSNT REGGTRSGRY SNNFRKSWGS RYRLDEEEEE EEEEYEYSST GVSDTEPNQE SHRQTLGLSS
201: SGPLNLEDVK IAYRACALKW HPDRHHTSTK NEAEEKFKLC TVAYQSLCEK LAMN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RXJ5]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.