CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004669.1-P	Field mustard	mitochondrion, nucleus, plastid	85.98	88.93
CDX79893	Canola	mitochondrion, nucleus, plastid	80.07	83.78
AT2G42080.1	Thale cress	mitochondrion, nucleus, plastid	70.48	72.62
CDY06886	Canola	mitochondrion, nucleus, plastid	66.79	70.7
KRH71846	Soybean	mitochondrion	41.33	46.47
KRG95387	Soybean	plastid	42.44	45.28
VIT_08s0007g06530.t01	Wine grape	plastid	42.07	43.68
CDY06058	Canola	plastid	39.85	42.02
GSMUA_Achr11P...	Banana	nucleus	32.1	41.63
KRH38097	Soybean	cytosol	28.04	41.08
Solyc03g063350.2.1	Tomato	cytosol	27.68	39.89
CDX71980	Canola	plastid	32.84	39.38
Os07t0470800-00	Rice	mitochondrion	33.95	36.22
TraesCS1B01G262100.2	Wheat	mitochondrion, nucleus, plastid	34.32	36.05
TraesCS1D01G251000.1	Wheat	mitochondrion	33.58	35.27
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	34.32	34.07
HORVU1Hr1G061530.1	Barley	plastid	33.95	33.58
Zm00001d021350_P003	Maize	plastid	31.37	32.95
KXG36196	Sorghum	plastid	31.0	32.68
CDY14812	Canola	mitochondrion, nucleus, plastid	67.16	32.04

Protein Annotations

EnsemblPlants:CDY65802	EnsemblPlantsGene:GSBRNA2T00048266001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45376	PFAM:PF00226	PFscan:PS50076	ProteinID:CDY65802	ProteinID:CDY65802.1
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EEF8B0	UniProt:A0A078JKD1	MapMan:35.2

Description

BnaC04g52460DBnaC04g52460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKD1]

Coordinates

chrLK034958:-:13028..15578

Molecular Weight (calculated)

31444.0 Da

IEP (calculated)

8.840

GRAVY (calculated)

-1.193

Length

271 amino acids

Sequence
(BLAST)

001: MNAAIRAAIQ RPQSLASHLK TALFHSTPVL ERKRRTSWES RSYVHKKRNR RMREKQELLR NVNAFAANMF PSWHDDGYDD DDDGEPSSRK QKSWYKKKYA
101: KETKGKWNGK HGSQSWGPRH FDFCGVDDDD FDIDYVFRTA FGGPRGFSFS FTFEEDEPPR WHHRDHSSRF SNKSSWKSKH RIYEDEEEED GYTSTESSDS
201: DSEPNQASHR QALGLSPSGP LNLKDVKNAF RTCALKWHPD RHQGSTKEAA EAKFKLCSVA YESLCEKLAV N

Best Arabidopsis Sequence Match ( AT2G42080.1 )
(BLAST)

001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:P93739]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.