Factsheet for TraesCS1B01G262100.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G251000.1	Wheat	mitochondrion	97.29	97.29
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	98.84	93.41
HORVU1Hr1G061530.1	Barley	plastid	94.19	88.69
Os07t0470800-00	Rice	mitochondrion	76.74	77.95
Zm00001d021350_P003	Maize	plastid	71.71	71.71
KXG36196	Sorghum	plastid	69.77	70.04
GSMUA_Achr11P...	Banana	nucleus	37.6	46.41
VIT_08s0007g06530.t01	Wine grape	plastid	44.19	43.68
Solyc03g063350.2.1	Tomato	cytosol	30.23	41.49
KRH71846	Soybean	mitochondrion	38.37	41.08
KRG95387	Soybean	plastid	39.53	40.16
KRH38097	Soybean	cytosol	28.68	40.0
AT2G42080.1	Thale cress	mitochondrion, nucleus, plastid	36.82	36.12
Bra004669.1-P	Field mustard	mitochondrion, nucleus, plastid	36.43	35.88
CDY06886	Canola	mitochondrion, nucleus, plastid	34.11	34.38
CDY65802	Canola	mitochondrion, nucleus, plastid	36.05	34.32
CDX79893	Canola	mitochondrion, nucleus, plastid	34.11	33.98
AT3G58020.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.95	33.46
CDY06058	Canola	plastid	32.17	32.3
CDX71980	Canola	plastid	27.52	31.42
AT2G42065.1	Thale cress	plastid	23.64	29.05
Bra007374.1-P	Field mustard	cytosol	19.77	28.98
TraesCS2B01G610800.1	Wheat	mitochondrion, nucleus	25.19	23.81
TraesCS1B01G024600.1	Wheat	mitochondrion, plastid	18.99	21.03
CDY14812	Canola	mitochondrion, nucleus, plastid	35.27	16.02
Bra016896.1-P	Field mustard	mitochondrion, nucleus, plastid	18.22	9.06

Protein Annotations

EnsemblPlants:TraesCS1B01G262100.2	EnsemblPlantsGene:TraesCS1B01G262100	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45376	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1B:-:460554942..460557843

Molecular Weight (calculated)

30048.3 Da

IEP (calculated)

9.506

GRAVY (calculated)

-1.169

Length

258 amino acids

Sequence
(BLAST)

001: MNHVKSALLS GHRPHRLAAA APQQLAATAS FHSTPPLQRK RKTQWQHRFN YYAKRRRNRD TKRTMIRNLS EYAEQLFDSW RDEDEKKDAS SGPSWFRGHR
101: WVRDSRNNGF RPHEFFYDTV KSRGGFEFCT SDDDDEPETV FRNAFRGNQH TYYWSFESDD FPRRNSRRSH SESSGHWSYE TDDEGEISTQ TEVSVARQAL
201: GLSTSGPLKL EDVKSAYRTC ALRWHPDRHH GSSKATAEEK FKRCSAAYQT LCDSLATA

Best Arabidopsis Sequence Match ( AT2G42080.1 )
(BLAST)

001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:P93739]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.