CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G42080.1	Thale cress	mitochondrion, nucleus, plastid	72.66	70.72
CDY65802	Canola	mitochondrion, nucleus, plastid	70.7	66.79
CDX79893	Canola	mitochondrion, nucleus, plastid	67.19	66.41
KRG95387	Soybean	plastid	43.75	44.09
KRH71846	Soybean	mitochondrion	41.02	43.57
CDY14812	Canola	mitochondrion, nucleus, plastid	94.92	42.78
VIT_08s0007g06530.t01	Wine grape	plastid	42.97	42.15
Solyc03g063350.2.1	Tomato	cytosol	30.86	42.02
CDY06058	Canola	plastid	41.8	41.63
CDX71980	Canola	plastid	33.59	38.05
KRH38097	Soybean	cytosol	26.95	37.3
GSMUA_Achr11P...	Banana	nucleus	30.08	36.84
TraesCS1B01G262100.2	Wheat	mitochondrion, nucleus, plastid	34.38	34.11
TraesCS1D01G251000.1	Wheat	mitochondrion	33.59	33.33
Os07t0470800-00	Rice	mitochondrion	32.81	33.07
KXG36196	Sorghum	plastid	32.42	32.3
TraesCS1A01G251500.1	Wheat	mitochondrion, nucleus, plastid	34.38	32.23
Zm00001d021350_P003	Maize	plastid	32.42	32.17
HORVU1Hr1G061530.1	Barley	plastid	33.59	31.39
Bra016896.1-P	Field mustard	mitochondrion, nucleus, plastid	58.98	29.09

Protein Annotations

EnsemblPlants:CDY06886	EnsemblPlantsGene:GSBRNA2T00123172001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45376	PFAM:PF00226	PFscan:PS50076	ProteinID:CDY06886	ProteinID:CDY06886.1
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EEEF9D	MapMan:35.2	:

Description

BnaA04g24290D

Coordinates

chrLK031974:+:25057..27280

Molecular Weight (calculated)

29844.3 Da

IEP (calculated)

9.270

GRAVY (calculated)

-1.139

Length

256 amino acids

Sequence
(BLAST)

001: MNAAVRAAIL RTQSVSSHLK ASFFHSTPVL ERKRRTSWDS KSNVHRKRFR RMREKQELLR NVNAFASNMF TSWHDEFDYK EPPSSQKRTS WFKKQYAKEP
101: KGKWNGKHGP RNFDFCEVDE DFDIDYIFPG GPRGFSFSFT YEDDEPPRWY RDQSSSRSSR SKHHRIYEDE DDDYTTSTES SDSESESEPN QASHRQALGL
201: SPSGPLNLKD VKHAYRVCAL KWHPDRHQGS TKEAAEAKFK LCSVAYQSLC EKLGVN

Best Arabidopsis Sequence Match ( AT2G42080.1 )
(BLAST)

001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:P93739]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.