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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 5
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G018240.1 Barley endoplasmic reticulum, extracellular, vacuole 38.13 64.54
TraesCS6B01G155700.1 Wheat cytosol, golgi, plasma membrane, plastid 31.42 61.48
TraesCS6A01G127500.1 Wheat plasma membrane 61.59 61.42
TraesCS6D01G115800.1 Wheat plasma membrane 63.13 60.83
TraesCS6D01G081500.1 Wheat cytosol, mitochondrion, peroxisome, plastid 40.5 59.92
TraesCS6B01G145300.1 Wheat mitochondrion 58.8 58.55
EES06299 Sorghum plasma membrane 57.82 58.15
TraesCS6B01G155800.1 Wheat mitochondrion 25.14 57.88
OQU84395 Sorghum cytosol, mitochondrion, plasma membrane, plastid 57.54 57.3
EES06300 Sorghum plasma membrane 56.84 56.84
EES06303 Sorghum plasma membrane 57.12 55.65
KXG29504 Sorghum plasma membrane 46.65 55.57
OQU84392 Sorghum plasma membrane 79.89 55.37
OQU84402 Sorghum endoplasmic reticulum, vacuole 39.39 55.19
OQU83397 Sorghum plasma membrane 55.03 53.9
EES08691 Sorghum plasma membrane 54.75 53.7
OQU84820 Sorghum extracellular, plastid, vacuole 25.42 53.69
EER88870 Sorghum plasma membrane 53.77 53.25
Os02t0157100-00 Rice extracellular 18.58 51.75
EES06297 Sorghum plasma membrane 74.86 50.76
KXG23540 Sorghum cytosol 44.69 47.62
TraesCS6B01G153400.1 Wheat plasma membrane 64.66 43.64
TraesCS6A01G125500.1 Wheat plasma membrane 63.83 43.24
Zm00001d053867_P001 Maize plasma membrane 64.8 42.65
KXG29501 Sorghum plasma membrane 62.85 42.53
TraesCS6A01G125300.1 Wheat plasma membrane 62.43 42.29
Os02t0153500-00 Rice plasma membrane 61.31 41.85
TraesCS6A01G125600.1 Wheat plasma membrane 59.64 41.54
Os02t0154200-01 Rice plasma membrane 60.75 41.47
HORVU6Hr1G023770.2 Barley plasma membrane 61.17 41.13
TraesCS6D01G116000.1 Wheat plasma membrane 48.04 39.45
CDX83918 Canola mitochondrion, plasma membrane 36.73 38.56
CDX96780 Canola mitochondrion, plasma membrane 36.45 38.27
Bra016611.1-P Field mustard mitochondrion, plasma membrane 36.31 38.12
AT1G17240.2 Thale cress plasma membrane 37.57 36.65
CDX81812 Canola extracellular, plasma membrane 26.82 35.69
AT1G17250.1 Thale cress plasma membrane 37.43 35.45
Bra025987.1-P Field mustard cytosol, golgi, plasma membrane 13.69 34.03
OQU82553 Sorghum cytosol, endoplasmic reticulum, plasma membrane 32.26 33.77
KXG23107 Sorghum extracellular, plasma membrane, vacuole 28.35 32.74
EER88868 Sorghum mitochondrion, plastid 39.66 32.13
KRH06825 Soybean cytosol, extracellular, nucleus 6.01 31.62
CDY48482 Canola plasma membrane 28.77 29.99
Solyc03g123780.2.1 Tomato plasma membrane 37.29 28.8
VIT_09s0002g00080.t01 Wine grape plasma membrane, plastid 42.88 28.48
EER88869 Sorghum plasma membrane 42.74 27.64
KRH06301 Soybean plasma membrane 40.5 27.23
PGSC0003DMT400023733 Potato plasma membrane 40.64 26.75
KRH47735 Soybean plasma membrane 37.01 26.71
KRH68996 Soybean plasma membrane 36.03 26.06
CDX82157 Canola plasma membrane 38.83 25.81
Bra008027.1-P Field mustard plasma membrane 38.69 25.72
Bra016068.1-P Field mustard plasma membrane 38.83 25.57
CDX96394 Canola plasma membrane 38.83 25.55
AT1G72300.1 Thale cress plasma membrane 38.69 25.3
EES11633 Sorghum plasma membrane 36.45 25.24
EES04361 Sorghum plasma membrane 38.55 25.02
EER95739 Sorghum plasma membrane 34.78 24.2
HORVU6Hr1G059580.1 Barley plasma membrane 19.13 24.16
KXG30676 Sorghum plasma membrane 34.92 23.83
CDY03644 Canola plasma membrane 27.65 22.94
CDY72222 Canola cytosol, nucleus, plastid 0.0 0.0
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1UniProt:A0A1Z5RKW9GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR001611InterPro:IPR032675InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_typical-subtypEnsemblPlants:OQU84393ProteinID:OQU84393ProteinID:OQU84393.1
PFAM:PF00560PFAM:PF08263PFAM:PF13855PRINTS:PR00019PFscan:PS51450PANTHER:PTHR43932
PANTHER:PTHR43932:SF11SMART:SM00369EnsemblPlantsGene:SORBI_3004G045000SUPFAM:SSF52047SUPFAM:SSF52058SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI000B425716SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:-:3699722..3702355
Molecular Weight (calculated)
77524.7 Da
IEP (calculated)
7.169
GRAVY (calculated)
0.071
Length
716 amino acids
Sequence
(BLAST)
001: MQPNHFSDNK CSSRLLVHFT ILLLISLTTP ASSCMELEQT SLLQFLAGLS QDAGLAKMWQ EGTDCCKWKG IACNRNGAVT RVSLPSMGLE GRISPDLGNL
101: TGLEHLNLSH NYLSGGLPLV LVSSSSITIL DISFNQLSGD LHELPSSTPA KPLKVLNISS NMFTGQFTSK TWKGMKNLVV LNASNNSFTG KIPSHFCNIS
201: PNFAILELCY NKLNGSIPPG LSKCSKLKVL KAGHNYLSGP LPEELFNATL LEHLSFSSNS LHGILEGTHI AELTNLVILD LGENNLSGKV PDSIVQLKKL
301: QELHLGYNSM SGELPSTLSN CTNLTNIDLK NNNFSGELTK VNFSNLPNLK ILDLRENNFS GKIPKSIYSC HKLAALRLSF NNLQGQLSKG LGNLKSLSFL
401: SLTGNSFTNL ANALQILKNS KNLTTLLIGH NFMNETMPDD DSIAGFEYLQ VLGIENCLLL GKVPLWISKI VKLEVLSLQG NQLSGPIPTW INTLNYLFYL
501: NLSNNSLTGD IPKELTNMPM LTSGKTAADL DPRIFDLTVY SGPSLQYRIP IAFPKVLYLS SNRFTGVIPQ EIGQLNALLS LGISSNNLTG PIPTSICNLT
601: NLLALDLSNN NLTGRIPDAL ENLHFLSTFN ISNNDLEGPV PTGGQFSTFQ DSSFAGNPKL CGPMLIHNCA SIETGPAPIG PTGLDGGNIF FAAAFVVFFG
701: VGVLYDQIIL SRFFGK
Best Arabidopsis Sequence Match ( AT1G17250.1 )
(BLAST)
001: MTNEGRFKAK GFVRTSSTTR PIQALSFHMI GILLQCVLFI SVLSIAVSEA LCNSQDRESL LWFSGNVSSS VSPLNWNPSI DCCSWEGITC DDSPDSHITA
101: ISLPFRALYG KLPLSVLRLH HLSQLNLSHN RLSGHLPSGF LSALDQLKVL DLSYNSLDGE LPVEQTFRNG SNRCFPIRIV DLSSNFLQGE ILPSSIFMQG
201: TFDLISFNVS KNSFTGSIPS FMCKSSPQLS KLDFSYNDFT GNIPQGLGRC LKLSVLQAGF NNISGEIPSD IYNLSELEQL FLPVNHLSGK INDDITHLTK
301: LKSLELYSNH LGGEIPMDIG QLSRLQSLQL HINNITGTVP PSLANCTNLV KLNLRLNRLE GTLSELDFSR FQSLSILDLG NNSFSGDFPW RVHSCKSLSA
401: MRFASNKLTG QISPHVLELE SLSILSLSDN KLMNITGALG ILQGCRNLST LLIGKNFYNE TFPSDKDLIS SDGFPNLQIF ASGGSGLRGE IPAWLIKLKS
501: LAVIDLSHNQ LVGSIPGWLG TFPHLFYIDL SENLLSGELP KDLFQLKALM SQKAYDATER NYLKLPVFVS PNNVTTHQQY NQLFSLPPGI YIRRNNLKGS
601: IPIEVGQLKV LHVLELSHNY LSGIIPHELS KLTSLERLDL SNNHLSGRIP WSLTSLHYMS YFNVVNNSLD GPIPTGSQFD TFPQANFKGN PLLCGGILLT
701: SCKASTKLPA TTTNKADTED EEELKFIFIL GVATGFFVSY CFYWCFFARL DAFISK
Arabidopsis Description
AtRLP3RLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WD64]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.