CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G154200.1	Wheat	vacuole	42.14	62.47
KXG29504	Sorghum	plasma membrane	51.32	61.4
OQU84402	Sorghum	endoplasmic reticulum, vacuole	42.84	60.27
TraesCS6B01G154400.1	Wheat	plastid	22.81	59.85
EES06299	Sorghum	plasma membrane	58.69	59.27
HORVU6Hr1G023210.3	Barley	extracellular, plasma membrane	62.45	58.69
TraesCS6A01G126200.1	Wheat	plasma membrane	58.14	58.38
EES06300	Sorghum	plasma membrane	58.0	58.24
TraesCS6D01G116600.1	Wheat	plastid	46.59	58.16
OQU84393	Sorghum	plasma membrane	57.3	57.54
EES08691	Sorghum	plasma membrane	56.19	55.34
EES06303	Sorghum	plasma membrane	56.47	55.24
OQU83397	Sorghum	plasma membrane	55.77	54.86
EER88870	Sorghum	plasma membrane	53.41	53.11
OQU84820	Sorghum	extracellular, plastid, vacuole	23.92	50.74
KXG23540	Sorghum	cytosol	47.29	50.6
KXG29501	Sorghum	plasma membrane	67.32	45.75
TraesCS6D01G114800.1	Wheat	plasma membrane	65.65	44.44
TraesCS6A01G124500.1	Wheat	plasma membrane	65.51	44.27
HORVU6Hr1G023100.9	Barley	plasma membrane	64.95	44.02
TraesCS6B01G152600.1	Wheat	plasma membrane	65.09	43.86
Os02t0153400-00	Rice	plasma membrane	64.39	43.56
EES06297	Sorghum	plasma membrane	60.64	41.29
CDX96780	Canola	mitochondrion, plasma membrane	37.69	39.74
CDX83918	Canola	mitochondrion, plasma membrane	37.55	39.59
Bra016611.1-P	Field mustard	mitochondrion, plasma membrane	37.55	39.59
OQU84392	Sorghum	plasma membrane	56.19	39.11
AT1G17240.2	Thale cress	plasma membrane	39.92	39.1
AT1G17250.1	Thale cress	plasma membrane	39.64	37.7
CDX81812	Canola	extracellular, plasma membrane	26.15	34.94
Bra025987.1-P	Field mustard	cytosol, golgi, plasma membrane	13.91	34.72
OQU82553	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	31.85	33.48
KXG23107	Sorghum	extracellular, plasma membrane, vacuole	28.79	33.39
KRH06825	Soybean	cytosol, extracellular, nucleus	6.26	33.09
EER88868	Sorghum	mitochondrion, plastid	40.06	32.58
CDY48482	Canola	plasma membrane	29.21	30.57
VIT_09s0002g00080.t01	Wine grape	plasma membrane, plastid	42.42	28.29
KRH06301	Soybean	plasma membrane	41.59	28.08
EER88869	Sorghum	plasma membrane	43.12	28.0
Solyc03g123780.2.1	Tomato	plasma membrane	35.74	27.72
KRH68996	Soybean	plasma membrane	37.69	27.37
KRH47735	Soybean	plasma membrane	37.41	27.12
Bra016068.1-P	Field mustard	plasma membrane	40.06	26.49
CDX96394	Canola	plasma membrane	40.06	26.47
Bra008027.1-P	Field mustard	plasma membrane	39.36	26.28
CDX82157	Canola	plasma membrane	39.22	26.18
PGSC0003DMT400023733	Potato	plasma membrane	39.36	26.01
AT1G72300.1	Thale cress	plasma membrane	39.36	25.84
KXG30676	Sorghum	plasma membrane	35.88	24.59
EER95739	Sorghum	plasma membrane	34.63	24.2
EES11633	Sorghum	plasma membrane	34.77	24.18
CDY03644	Canola	plasma membrane	28.65	23.87
EES04361	Sorghum	plasma membrane	36.58	23.84
CDY72222	Canola	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A1Z5RLR0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	EnsemblPlants:OQU84395	ProteinID:OQU84395	ProteinID:OQU84395.1
PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR43932
PANTHER:PTHR43932:SF12	SMART:SM00365	SMART:SM00369	EnsemblPlantsGene:SORBI_3004G045700	SUPFAM:SSF52058	TMHMM:TMhelix
UniParc:UPI000B4255AB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3749722..3752365

Molecular Weight (calculated)

78791.9 Da

IEP (calculated)

7.405

GRAVY (calculated)

0.003

Length

719 amino acids

Sequence
(BLAST)

001: MQREHHSSCK SKVSRLAKSF FGIVLLLTMA YPATSCNEQE KSSLLQFLTE LSHEDGVAMS WRDGTDCCKW EGITCNESGA VIEVSLASRS LEGSISSSLS
101: KLTDLLRLNL SHNSLSGNLP SGLMSSGNIT VLDVSFNRLS GTLKEPLLSI TEHPLQVLNI SSNMFTGEFP STIWEKTRNL IAINASNNSF QGCIPSSFCI
201: SSSSFSVLDL SFNQFSGSIP AGLGKCSELR IVKAGHNRLS GSLSEEFFNA TSLEHLSFPN NGLHGLLNGA HIMKLRNLAN LDLGGNMLNG KIPESIGQLK
301: RLLELHLNNN NMSGELPSAL SNCTNIIMID LKSNNFSGKL QKINFFNLPN LQALDLLYNN FTGTIPESIY SCSNLIALRL SSNNLHGQLS PRIRNLKSLV
401: FLSLGANNFT NITNTLHILK DCRNLTTLLI GTSFKGEAMP QDEIIDGFQN LRVLSITDCS LSGNIPLWLS KLKNLEMLFL NRNQLSGSIP AWIKNLNSLF
501: HLDLSRNNLT GELPTALTEM PMLRTETATA HMDLRASEFE LPLYLDHSFQ YRIASTFKKT LDLGRNNLTG VIPQEIVQLK SLEKLNFSFN SLSGEIPQQL
601: SKLTNLQVLD LSSNHLTGAI PSALSNLHFL SEFNVSHNDL EGPIPSGGQL STFPSSSFDG NPKLCGIIVA KLCGSVEAPT VSVHSPKKMN KMVAFFIAFG
701: PFFVVGVLYD QIVLSRYFG

Best Arabidopsis Sequence Match ( AT1G17250.1 )
(BLAST)

001: MTNEGRFKAK GFVRTSSTTR PIQALSFHMI GILLQCVLFI SVLSIAVSEA LCNSQDRESL LWFSGNVSSS VSPLNWNPSI DCCSWEGITC DDSPDSHITA
101: ISLPFRALYG KLPLSVLRLH HLSQLNLSHN RLSGHLPSGF LSALDQLKVL DLSYNSLDGE LPVEQTFRNG SNRCFPIRIV DLSSNFLQGE ILPSSIFMQG
201: TFDLISFNVS KNSFTGSIPS FMCKSSPQLS KLDFSYNDFT GNIPQGLGRC LKLSVLQAGF NNISGEIPSD IYNLSELEQL FLPVNHLSGK INDDITHLTK
301: LKSLELYSNH LGGEIPMDIG QLSRLQSLQL HINNITGTVP PSLANCTNLV KLNLRLNRLE GTLSELDFSR FQSLSILDLG NNSFSGDFPW RVHSCKSLSA
401: MRFASNKLTG QISPHVLELE SLSILSLSDN KLMNITGALG ILQGCRNLST LLIGKNFYNE TFPSDKDLIS SDGFPNLQIF ASGGSGLRGE IPAWLIKLKS
501: LAVIDLSHNQ LVGSIPGWLG TFPHLFYIDL SENLLSGELP KDLFQLKALM SQKAYDATER NYLKLPVFVS PNNVTTHQQY NQLFSLPPGI YIRRNNLKGS
601: IPIEVGQLKV LHVLELSHNY LSGIIPHELS KLTSLERLDL SNNHLSGRIP WSLTSLHYMS YFNVVNNSLD GPIPTGSQFD TFPQANFKGN PLLCGGILLT
701: SCKASTKLPA TTTNKADTED EEELKFIFIL GVATGFFVSY CFYWCFFARL DAFISK

Arabidopsis Description

AtRLP3RLP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WD64]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.