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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 27992503
plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G429700.1 Wheat peroxisome 75.17 76.22
TraesCS3D01G425000.1 Wheat peroxisome 73.56 74.42
EES04118 Sorghum cytosol 74.71 74.03
HORVU3Hr1G094560.3 Barley cytosol, mitochondrion, peroxisome 74.94 73.76
Zm00001d012019_P001 Maize peroxisome 71.95 71.62
TraesCS3B01G467600.1 Wheat peroxisome 72.18 71.36
Os04t0382300-01 Rice cytoskeleton, cytosol, peroxisome 53.56 54.82
Os01t0586600-01 Rice cytosol 12.64 24.89
Os01t0633400-01 Rice nucleus 23.22 24.82
Protein Annotations
EnsemblPlants:Os01t0921500-01EnsemblPlantsGene:Os01g0921500EntrezGene:4327751Gene3D:3.10.580.10InterPro:CBS_domInterPro:IPR000644
PANTHER:PTHR13780PANTHER:PTHR13780:SF93PFAM:PF00571PFscan:PS51371ProteinID:BAB86178.1ProteinID:BAD88372.1
ProteinID:BAF07142.1ProteinID:BAS75942.1RefSeq:XP_015616061.1SEG:segSMART:SM00116SUPFAM:SSF54631
UniParc:UPI00000A6A33UniProt:Q8RZI9MapMan:18.4.5.1.3MapMan:27.3.1.3::
Description
cystathionine b-synthase domain containing protein OsCBSCBS2, CBS domain containing protein OsCBSCBS2Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1). (Os01t0921500-01)
Coordinates
chr1:-:40238689..40240454
Molecular Weight (calculated)
47992.3 Da
IEP (calculated)
5.243
GRAVY (calculated)
-0.180
Length
435 amino acids
Sequence
(BLAST)
001: MQARREVRTK EEQWRGEERV VESPLGSARW SPEAEIGMRV EDIWDSLDQP QLSDRDRLNS CFDAIPVASF PHTFDGAQVV EIPSDATLAE AVDILSRHRI
101: ITAPVRNVDA PDDASWIDRY IGVVEFAGIA VWLLHQSEAA AARADDLGAD ELAAKLGTVA LEGAAAARAP DQQQSAEGAV AEAFGALPSS DLFNKTKVKD
201: ISGSFRWAPF LALQSSDTFL TMLLLLSKYR MKSLPVVDIG EGTISNVITQ AAVVHMLAEC AGLHWFEDWG AKSLTELGLP MIRPSRLVKV RHDEPALKAF
301: RLMRKRGVGG IPVVDHAGKP TGSIMIKDVK HLLASSDANR DYRTLTAQEF IANARQSSGE KQMNIVTCKK EESIKEIIFK LDAEKRQRIY VVDEQGNLDG
401: LITLRDIIAK LVYEPPGYFG DFFNGVFPLP QNSRV
Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)
001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV
Arabidopsis Description
KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.