Factsheet for Os01t0633400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 18203134

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32947	Sorghum	cytosol	74.69	73.61
TraesCS3A01G226700.1	Wheat	nucleus	71.99	73.07
TraesCS3D01G224700.1	Wheat	nucleus	71.5	71.85
TraesCS3B01G257800.1	Wheat	plastid	70.76	71.64
Zm00001d044124_P001	Maize	cytosol	71.25	71.25
GSMUA_Achr2P09000_001	Banana	cytoskeleton, cytosol, peroxisome	43.73	44.39
KRH60826	Soybean	nucleus	33.91	39.88
KRH51517	Soybean	nucleus	41.28	38.53
VIT_03s0038g04580.t01	Wine grape	cytosol, golgi, peroxisome, plastid	40.29	36.44
Os01t0921500-01	Rice	plasma membrane, plastid	24.82	23.22
Os04t0382300-01	Rice	cytoskeleton, cytosol, peroxisome	22.6	21.65
Os01t0586600-01	Rice	cytosol	8.35	15.38

Protein Annotations

EMBL:AK108988	EnsemblPlants:Os01t0633400-01	EnsemblPlantsGene:Os01g0633400	EntrezGene:4326596	Gene3D:3.10.580.10	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF22	PFAM:PF00571	PFscan:PS51371	ProteinID:BAD68894.1
ProteinID:BAF05570.1	ProteinID:BAS73317.1	RefSeq:XP_015650432.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI0000457FC1	UniProt:Q5VNT2	MapMan:18.4.5.1.3	MapMan:27.3.1.3	:	:

Description

cystathionine b-synthase domain containing protein OsCBSX10, CBS domain containing protein OsCBSX10Cystathionine beta-synthase, core domain containing protein. (Os01t0633400-01)

Coordinates

chr1:+:25368481..25371006

Molecular Weight (calculated)

44090.3 Da

IEP (calculated)

5.287

GRAVY (calculated)

-0.066

Length

407 amino acids

Sequence
(BLAST)

001: METGAAGQAG GGGPAAAAAA GEYWSEALKS FLDHIPVSSV NGAIQPSPSP ALEIRLDGSV PDAIDSMYRS DVAGAVIVDD VRTSFGKFVD RDIGFVEFPS
101: LVLWAIEEFD KLGSGAGDKN SDFLTSLKQH PQIAETKIAW LAKSFLWEPF FPVRSHDTLF HAMLLFSKHR RINVVPVVEL MNSSVIGFVT QNAVMELLLS
201: SSGLEWLDKI ADKQLSEFRF ANTTKPVSVY SDQTLADALH ILSKEKIGVA VVDRKTSCLI GSIQCSDLYQ LLDDSSLFRN RKTLSAEEFV KLKSKDEDIS
301: TENSSASGGQ NVLSLRTGQR ITAGLPVTNR KSDTLKQAME KLTASRSSCS FIVDEHGRVE GVVTARDIIS VFSPPCMDSR IDGGTFFSAA LAQTGCRVEH
401: GQMIQNS

Best Arabidopsis Sequence Match ( AT3G48530.1 )
(BLAST)

001: MATVPEIKIM RSESLGHRSD VSSPEAKLGM RVEDLWDEQK PQLSPNEKLN ACFESIPVSA FPLSSDSQDI EIRSDTSLAE AVQTLSKFKV LSAPVVDVDA
101: PEDASWIDRY IGIVEFPGIV VWLLHQLEPP SPRSPAVAAS NGFSHDFTTD VLDNGDSAVT SGNFFEVLTS SELYKNTKVR DISGTFRWAP FLALQKENSF
201: LTMLLLLSKY KMKSIPVVDL GVAKIENIIT QSGVIHMLAE CAGLLWFEDW GIKTLSEVGL PIMSKDHIIK IYEDEPVLQA FKLMRRKRIG GIPVIERNSE
301: KPVGNISLRD VQFLLTAPEI YHDYRSITTK NFLVSVREHL EKCGDTSAPI MSGVIACTKN HTLKELILML DAEKIHRIYV VDDFGNLEGL ITLRDIIARL
401: VHEPSGYFGD FFDGVMPLPE NYRV

Arabidopsis Description

KING1SNF1-related protein kinase regulatory subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.