Factsheet for Os03t0826800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19530.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93164	Sorghum	nucleus	58.04	55.7
HORVU5Hr1G115250.2	Barley	nucleus	44.76	51.61
HORVU5Hr1G114140.3	Barley	cytosol	45.45	47.45
HORVU5Hr1G074610.3	Barley	cytosol	41.96	47.24
CDY29422	Canola	cytosol, nucleus, plastid	34.97	45.05
Bra025747.1-P	Field mustard	cytosol, nucleus, plastid	34.27	44.14
GSMUA_Achr3P24730_001	Banana	cytosol	37.76	42.86
CDY39371	Canola	cytosol, nucleus, plastid	34.97	42.73
AT1G19530.1	Thale cress	nucleus	30.77	37.61
PGSC0003DMT400009462	Potato	cytosol	34.97	35.46
KRH51839	Soybean	cytosol	34.27	35.25
Solyc04g080540.2.1	Tomato	cytosol	34.27	34.75
GSMUA_Achr11P...	Banana	nucleus	39.86	33.14
KRH61149	Soybean	nucleus	32.87	32.64
KRH51838	Soybean	cytoskeleton, cytosol, nucleus	32.17	31.94
KRH15176	Soybean	cytoskeleton, cytosol, nucleus	30.07	31.39
PGSC0003DMT400013741	Potato	nucleus	25.17	30.77
KRH05842	Soybean	nucleus	30.77	30.34
VIT_18s0001g12680.t01	Wine grape	nucleus	28.67	27.89
KRG99145	Soybean	cytosol	18.88	22.88

Protein Annotations

EMBL:AK119789	EnsemblPlants:Os03t0826800-01	EnsemblPlantsGene:Os03g0826800	EntrezGene:4334643	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009061	GO:GO:0009987	PANTHER:PTHR33872	PANTHER:PTHR33872:SF2	ProteinID:AAK82443.1
ProteinID:AAL79748.1	ProteinID:ABF99652.1	ProteinID:BAF13681.1	ProteinID:BAS87164.1	ProteinID:EAZ29137.1	RefSeq:XP_015628372.1
SEG:seg	UniParc:UPI00000A45EE	UniProt:Q94GF4	MapMan:35.2	:	:

Description

Conserved hypothetical protein. (Os03t0826800-01)

Coordinates

chr3:-:34733490..34734706

Molecular Weight (calculated)

15411.9 Da

IEP (calculated)

7.919

GRAVY (calculated)

-0.678

Length

143 amino acids

Sequence
(BLAST)

001: MGSLMAGWDS PVLGDENRVL ARRNKSLTRE EVEAFWKQHG GEMMSGSPLG SPAAGGMARS APVSRSKAHA SSPRGGRIDP ATRVEGFFPH DDAAAAESPS
101: KSHDWWTRSN WAFLNEPPQE EIAGKAQNYA PQFHVARIAT GNA

Best Arabidopsis Sequence Match ( AT1G19530.1 )
(BLAST)

001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS

Arabidopsis Description

DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.