Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 67.52 | 71.17 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 66.67 | 70.27 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 64.96 | 64.96 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 26.5 | 46.97 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 43.59 | 37.23 |
| KRH51839 | Soybean | cytosol | 42.73 | 35.97 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 38.46 | 35.71 |
| KRH05842 | Soybean | nucleus | 43.59 | 35.17 |
| PGSC0003DMT400013741 | Potato | nucleus | 35.04 | 35.04 |
| PGSC0003DMT400009462 | Potato | cytosol | 41.88 | 34.75 |
| Solyc04g080540.2.1 | Tomato | cytosol | 41.03 | 34.04 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 37.61 | 33.33 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 41.03 | 33.33 |
| KRH61149 | Soybean | nucleus | 40.17 | 32.64 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 36.75 | 32.09 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 33.33 | 31.45 |
| Os03t0826800-01 | Rice | plasma membrane | 37.61 | 30.77 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 37.61 | 29.93 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 35.9 | 29.58 |
| EER93164 | Sorghum | nucleus | 37.61 | 29.53 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 33.33 | 28.47 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 29.91 | 27.56 |
| KRG99145 | Soybean | cytosol | 27.35 | 27.12 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 30.77 | 26.67 |
| Zm00001d012920_P001 | Maize | plastid | 29.91 | 26.12 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 28.21 | 24.81 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 27.35 | 24.81 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 28.21 | 24.26 |
| GSMUA_Achr11P... | Banana | nucleus | 34.19 | 23.26 |
| EER90597 | Sorghum | plastid | 32.48 | 20.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838540 | UniProt:A0A178WK40 | ProteinID:AEE29865.1 | EMBL:AF370213 | ProteinID:ANM60079.1 |
| ArrayExpress:AT1G19530 | EnsemblPlantsGene:AT1G19530 | RefSeq:AT1G19530 | TAIR:AT1G19530 | RefSeq:AT1G19530-TAIR-G | EnsemblPlants:AT1G19530.1 |
| TAIR:AT1G19530.1 | EMBL:AY056353 | EMBL:AY087914 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009061 | GO:GO:0009987 | RefSeq:NP_001322391.1 | RefSeq:NP_564090.1 | ProteinID:OAP18690.1 | PO:PO:0000230 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 | PANTHER:PTHR33872 |
| PANTHER:PTHR33872:SF2 | UniProt:Q93WK6 | UniParc:UPI00000A1DDC | SEG:seg | : | : |
Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
Coordinates
chr1:+:6763765..6765049
Molecular Weight (calculated)
13656.9 Da
IEP (calculated)
9.837
GRAVY (calculated)
-1.127
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.