Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G115250.2 | Barley | nucleus | 77.61 | 83.87 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 75.37 | 76.52 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 79.1 | 74.65 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 75.37 | 73.72 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 57.46 | 60.63 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 35.82 | 43.24 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 40.3 | 42.86 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 35.07 | 42.34 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 41.79 | 41.48 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 35.07 | 40.17 |
| AT1G19530.1 | Thale cress | nucleus | 32.09 | 36.75 |
| KRH51839 | Soybean | cytosol | 36.57 | 35.25 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 37.31 | 34.72 |
| Solyc04g080540.2.1 | Tomato | cytosol | 35.82 | 34.04 |
| KRH61149 | Soybean | nucleus | 36.57 | 34.03 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 34.33 | 33.58 |
| PGSC0003DMT400009462 | Potato | cytosol | 34.33 | 32.62 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 35.07 | 31.97 |
| KRH05842 | Soybean | nucleus | 33.58 | 31.03 |
| GSMUA_Achr11P... | Banana | nucleus | 38.81 | 30.23 |
| PGSC0003DMT400013741 | Potato | nucleus | 25.37 | 29.06 |
| KRG99145 | Soybean | cytosol | 20.9 | 23.73 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G369300.1 | EnsemblPlantsGene:TraesCS4A01G369300 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4A:+:641480727..641481556
Molecular Weight (calculated)
14413.6 Da
IEP (calculated)
7.798
GRAVY (calculated)
-0.890
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWDS PVLGDGTKAR VTRNRSLTKE EVEAFWRQRG KPAPEDGGDV TSPLGSPGRP MEKSPLGSSQ RSRSPASSPV SGVHEETIGA ADAGKSRDWW
101: TRSNWAFLNE PPQEERPGTA HTYTPQFHVA AGNA
101: TRSNWAFLNE PPQEERPGTA HTYTPQFHVA AGNA
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.