Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G504500.1 | Wheat | nucleus | 81.48 | 80.88 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 76.3 | 77.44 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 41.48 | 41.79 |
| Zm00001d012920_P001 | Maize | plastid | 37.04 | 37.31 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 31.85 | 34.13 |
| AT1G19530.1 | Thale cress | nucleus | 26.67 | 30.77 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 31.11 | 30.66 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 24.44 | 29.73 |
| KRH51839 | Soybean | cytosol | 30.37 | 29.5 |
| EER90597 | Sorghum | plastid | 40.74 | 28.95 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 23.7 | 28.83 |
| KRH61149 | Soybean | nucleus | 30.37 | 28.47 |
| KRH05842 | Soybean | nucleus | 30.37 | 28.28 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 24.44 | 28.21 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 29.63 | 27.78 |
| PGSC0003DMT400013741 | Potato | nucleus | 22.96 | 26.5 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 28.15 | 25.85 |
| PGSC0003DMT400009462 | Potato | cytosol | 26.67 | 25.53 |
| Solyc04g080540.2.1 | Tomato | cytosol | 26.67 | 25.53 |
| GSMUA_Achr11P... | Banana | nucleus | 31.85 | 25.0 |
| KRG99145 | Soybean | cytosol | 17.04 | 19.49 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G368900.1 | EnsemblPlantsGene:TraesCS4A01G368900 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4A:+:641416792..641417596
Molecular Weight (calculated)
14441.6 Da
IEP (calculated)
6.808
GRAVY (calculated)
-0.760
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWSS HALDDDLKAR FMRNRSLTKD EVEAFWRQHK KPAPEDNVDG GETVVASSPR KGSPRLTTRP PTLSHVRSSP PVMTSSVDGD GDGEAAASPS
101: ASRDWWTRSS WAFLNEPPPQ QREGGGVGQG AAAAV
101: ASRDWWTRSS WAFLNEPPPQ QREGGGVGQG AAAAV
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.