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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • peroxisome 1
  • plasma membrane 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19530.1 VIT_01s0011g06410.t01 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH05842 Soybean nucleus 49.66 50.34
KRH15176 Soybean cytoskeleton, cytosol, nucleus 44.9 48.18
KRH51838 Soybean cytoskeleton, cytosol, nucleus 46.94 47.92
KRH61149 Soybean nucleus 44.9 45.83
KRH51839 Soybean cytosol 42.86 45.32
PGSC0003DMT400009462 Potato cytosol 42.86 44.68
GSMUA_Achr3P24730_001 Banana cytosol 35.37 41.27
Solyc04g080540.2.1 Tomato cytosol 39.46 41.13
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane, plastid 18.37 40.91
CDY29422 Canola cytosol, nucleus, plastid 29.93 39.64
Bra025747.1-P Field mustard cytosol, nucleus, plastid 29.25 38.74
AT1G19530.1 Thale cress nucleus 29.93 37.61
CDY39371 Canola cytosol, nucleus, plastid 29.93 37.61
KRG99145 Soybean cytosol 29.93 37.29
HORVU5Hr1G115250.2 Barley nucleus 30.61 36.29
TraesCS4A01G369300.1 Wheat cytosol 31.97 35.07
TraesCS5B01G503400.1 Wheat nucleus 31.29 34.85
PGSC0003DMT400013741 Potato nucleus 26.53 33.33
TraesCS5D01G504200.1 Wheat cytosol 31.97 33.1
HORVU5Hr1G114140.3 Barley cytosol 30.61 32.85
HORVU5Hr1G074610.3 Barley cytosol 27.21 31.5
TraesCS5B01G503600.1 Wheat cytosol 26.53 29.32
TraesCS5B01G503700.1 Wheat nucleus 25.17 28.68
Os03t0826800-01 Rice plasma membrane 27.89 28.67
EER93164 Sorghum nucleus 28.57 28.19
TraesCS4A01G368900.1 Wheat nucleus 25.85 28.15
TraesCS5D01G504500.1 Wheat nucleus 25.85 27.94
GSMUA_Achr11P... Banana nucleus 32.65 27.91
Zm00001d012920_P001 Maize plastid 23.13 25.37
EER90597 Sorghum plastid 29.25 22.63
Protein Annotations
ArrayExpress:VIT_18s0001g12680EMBL:FN595227EnsemblPlants:VIT_18s0001g12680.t01EnsemblPlantsGene:VIT_18s0001g12680EntrezGene:100259078EntrezGene:LOC100259078
PANTHER:PTHR33872PANTHER:PTHR33872:SF2ProteinID:CBI19715ProteinID:CBI19715.3RefSeq:XP_002282213RefSeq:XP_002282213.1
unigene:Vvi.8552UniParc:UPI00015C7C7BUniProt:E0CQE6wikigene:100259078wikigene:LOC100259078MapMan:35.2
Description
No Description!
Coordinates
chr18:+:10838362..10839539
Molecular Weight (calculated)
16631.3 Da
IEP (calculated)
8.903
GRAVY (calculated)
-0.891
Length
147 amino acids
Sequence
(BLAST)
001: MAGWDSRVRD PKAETYQRNR SFTKGEIDAY WRTKKKIEEE HLKAISDTSD GSQESTFKEE SAGIKLQRSS SLPLANTKER FMENIIETGT DLEKLLQKNG
101: WWTRSNWAYL NEPPVIGPEG ASHKFAAQFH VAGLSASKAN PRAEITT
Best Arabidopsis Sequence Match ( AT1G19530.1 )
(BLAST)
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.