Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P24730_001 | Banana | cytosol | 39.32 | 36.51 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 20.51 | 36.36 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 33.33 | 35.14 |
| AT1G19530.1 | Thale cress | nucleus | 35.04 | 35.04 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 41.03 | 35.04 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 32.48 | 34.23 |
| PGSC0003DMT400009462 | Potato | cytosol | 41.03 | 34.04 |
| KRH61149 | Soybean | nucleus | 41.88 | 34.03 |
| KRH51839 | Soybean | cytosol | 40.17 | 33.81 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 41.03 | 33.33 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 32.48 | 32.48 |
| KRH05842 | Soybean | nucleus | 39.32 | 31.72 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 30.77 | 27.91 |
| KRG99145 | Soybean | cytosol | 27.35 | 27.12 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 33.33 | 26.53 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 29.91 | 26.52 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 27.35 | 25.81 |
| EER93164 | Sorghum | nucleus | 32.48 | 25.5 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 29.06 | 25.37 |
| Os03t0826800-01 | Rice | plasma membrane | 30.77 | 25.17 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 28.21 | 24.81 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 26.5 | 24.41 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 28.21 | 24.26 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 29.06 | 23.94 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 27.35 | 23.36 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 26.5 | 22.96 |
| Zm00001d012920_P001 | Maize | plastid | 24.79 | 21.64 |
| GSMUA_Achr11P... | Banana | nucleus | 31.62 | 21.51 |
| EER90597 | Sorghum | plastid | 28.21 | 17.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013741 | EnsemblPlantsGene:PGSC0003DMG400005376 | EntrezGene:102601210 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | PGSC:PGSC0003DMG400005376 |
| RefSeq:XP_015161566.1 | UniParc:UPI000295EB97 | UniProt:M1A3A2 | MapMan:35.2 | : | : |
Description
ST225 [Source:PGSC_GENE;Acc:PGSC0003DMG400005376]
Coordinates
chr7:+:20497470..20498915
Molecular Weight (calculated)
13587.9 Da
IEP (calculated)
6.352
GRAVY (calculated)
-1.062
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWDC YIPDPQVVKY KRNKSLTKEE IEAFWRSKKH REEDEVMSNS MLSSQTQIHD HQANDETTNS KDDDEEKLIK KHGWWVSSSL AHLNEPPVLP
101: PQEPTTYKRV SLFKQSG
101: PQEPTTYKRV SLFKQSG
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.