Factsheet for GSMUA_Achr11P14140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19530.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P24730_001	Banana	cytosol	36.05	49.21
HORVU5Hr1G115250.2	Barley	nucleus	30.23	41.94
Os03t0826800-01	Rice	plasma membrane	33.14	39.86
TraesCS4A01G369300.1	Wheat	cytosol	30.23	38.81
Bra025747.1-P	Field mustard	cytosol, nucleus, plastid	25.0	38.74
CDY29422	Canola	cytosol, nucleus, plastid	25.0	38.74
TraesCS5D01G504200.1	Wheat	cytosol	31.98	38.73
EER93164	Sorghum	nucleus	33.14	38.26
HORVU5Hr1G114140.3	Barley	cytosol	30.23	37.96
TraesCS5B01G503400.1	Wheat	nucleus	29.07	37.88
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane, plastid	14.53	37.88
HORVU5Hr1G074610.3	Barley	cytosol	27.91	37.8
PGSC0003DMT400009462	Potato	cytosol	30.23	36.88
Solyc04g080540.2.1	Tomato	cytosol	29.65	36.17
KRH61149	Soybean	nucleus	30.23	36.11
KRH51839	Soybean	cytosol	29.07	35.97
CDY39371	Canola	cytosol, nucleus, plastid	24.42	35.9
KRH51838	Soybean	cytoskeleton, cytosol, nucleus	29.65	35.42
AT1G19530.1	Thale cress	nucleus	23.26	34.19
TraesCS5B01G503700.1	Wheat	nucleus	25.0	33.33
KRH05842	Soybean	nucleus	27.91	33.1
TraesCS5B01G503600.1	Wheat	cytosol	25.58	33.08
KRH15176	Soybean	cytoskeleton, cytosol, nucleus	26.16	32.85
VIT_18s0001g12680.t01	Wine grape	nucleus	27.91	32.65
TraesCS4A01G368900.1	Wheat	nucleus	25.0	31.85
PGSC0003DMT400013741	Potato	nucleus	21.51	31.62
Zm00001d012920_P001	Maize	plastid	23.84	30.6
TraesCS5D01G504500.1	Wheat	nucleus	23.84	30.15
EER90597	Sorghum	plastid	26.74	24.21
KRG99145	Soybean	cytosol	15.7	22.88

Protein Annotations

EnsemblPlants:GSMUA_Achr11P14140_001	EnsemblPlants:GSMUA_Achr11T14140_001	EnsemblPlantsGene:GSMUA_Achr11G14140_001	PANTHER:PTHR33872	PANTHER:PTHR33872:SF2	UniParc:UPI000294CB4C
UniProt:M0RS44	MapMan:35.2	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G14140_001]

Coordinates

chr11:+:15210075..15211073

Molecular Weight (calculated)

19972.2 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.810

Length

172 amino acids

Sequence
(BLAST)

001: MGSLMAGWSS PVLDPETVRH RRNRSLTKEE IEIYRSSHGR VEGEKGPYES RSAPNSPKRH QTDELDLRRS LLWHQLQNTE PAAEPLPDNP TNTGDWWTRS
101: NSAFLNEPPR EEADVAAHKY TAQFHVAELA TKKAHQFSFS NFPRSAQLFF IYKNVSFENS PLIFYIIHLR YF

Best Arabidopsis Sequence Match ( AT1G19530.1 )
(BLAST)

001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS

Arabidopsis Description

DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.