Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009462 | Potato | cytosol | 88.65 | 88.65 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 37.59 | 47.75 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 36.88 | 46.85 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 38.3 | 46.15 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 43.26 | 44.53 |
| KRH51838 | Soybean | cytoskeleton, cytosol, nucleus | 44.68 | 43.75 |
| KRH05842 | Soybean | nucleus | 43.26 | 42.07 |
| KRH61149 | Soybean | nucleus | 42.55 | 41.67 |
| AT1G19530.1 | Thale cress | nucleus | 34.04 | 41.03 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 19.15 | 40.91 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 41.13 | 39.46 |
| KRH51839 | Soybean | cytosol | 38.3 | 38.85 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 34.04 | 38.1 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 34.75 | 37.12 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 32.62 | 37.1 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 34.04 | 35.82 |
| Os03t0826800-01 | Rice | plasma membrane | 34.75 | 34.27 |
| KRG99145 | Soybean | cytosol | 28.37 | 33.9 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 30.5 | 33.86 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 34.04 | 33.8 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 32.62 | 33.58 |
| EER93164 | Sorghum | nucleus | 34.75 | 32.89 |
| GSMUA_Achr11P... | Banana | nucleus | 36.17 | 29.65 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 26.24 | 28.68 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 25.53 | 27.07 |
| Zm00001d012920_P001 | Maize | plastid | 25.53 | 26.87 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 25.53 | 26.67 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 24.82 | 25.74 |
| EER90597 | Sorghum | plastid | 31.91 | 23.68 |
Protein Annotations
| EnsemblPlants:Solyc04g080540.2.1 | EnsemblPlantsGene:Solyc04g080540.2 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009061 |
| GO:GO:0009987 | ncoils:Coil | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 | SEG:seg | UniParc:UPI000276588D |
| UniProt:K4BVD3 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:64676105..64677648
Molecular Weight (calculated)
15891.6 Da
IEP (calculated)
6.810
GRAVY (calculated)
-0.784
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWDS PVSDPQAMKL RTNKSLTKKE IDAYWRSKKL IEEEHQKYIS TLSPRSQKQA NIVFEEATKT AEESLSNLEN EESLDQLIRK NGWWISSNWA
101: HLNEPPVEVR EGPAYKYVSQ FHVANMATGS NTKPGPAGIN A
101: HLNEPPVEVR EGPAYKYVSQ FHVANMATGS NTKPGPAGIN A
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.