Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19530.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT1G19530.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61149 | Soybean | nucleus | 93.75 | 93.75 |
| KRH51839 | Soybean | cytosol | 79.17 | 82.01 |
| KRH05842 | Soybean | nucleus | 65.28 | 64.83 |
| KRG99145 | Soybean | cytosol | 52.08 | 63.56 |
| KRH15176 | Soybean | cytoskeleton, cytosol, nucleus | 56.94 | 59.85 |
| VIT_18s0001g12680.t01 | Wine grape | nucleus | 47.92 | 46.94 |
| PGSC0003DMT400009462 | Potato | cytosol | 45.83 | 46.81 |
| CDY29422 | Canola | cytosol, nucleus, plastid | 35.42 | 45.95 |
| Bra025747.1-P | Field mustard | cytosol, nucleus, plastid | 34.72 | 45.05 |
| Solyc04g080540.2.1 | Tomato | cytosol | 43.75 | 44.68 |
| CDY39371 | Canola | cytosol, nucleus, plastid | 35.42 | 43.59 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane, plastid | 19.44 | 42.42 |
| GSMUA_Achr3P24730_001 | Banana | cytosol | 36.11 | 41.27 |
| AT1G19530.1 | Thale cress | nucleus | 33.33 | 41.03 |
| PGSC0003DMT400013741 | Potato | nucleus | 33.33 | 41.03 |
| HORVU5Hr1G115250.2 | Barley | nucleus | 32.64 | 37.9 |
| TraesCS4A01G369300.1 | Wheat | cytosol | 34.72 | 37.31 |
| TraesCS5B01G503400.1 | Wheat | nucleus | 32.64 | 35.61 |
| HORVU5Hr1G114140.3 | Barley | cytosol | 32.64 | 34.31 |
| HORVU5Hr1G074610.3 | Barley | cytosol | 29.86 | 33.86 |
| TraesCS5D01G504200.1 | Wheat | cytosol | 33.33 | 33.8 |
| Os03t0826800-01 | Rice | plasma membrane | 31.94 | 32.17 |
| EER93164 | Sorghum | nucleus | 32.64 | 31.54 |
| TraesCS5B01G503700.1 | Wheat | nucleus | 27.78 | 31.01 |
| Zm00001d012920_P001 | Maize | plastid | 28.47 | 30.6 |
| GSMUA_Achr11P... | Banana | nucleus | 35.42 | 29.65 |
| TraesCS4A01G368900.1 | Wheat | nucleus | 27.78 | 29.63 |
| TraesCS5B01G503600.1 | Wheat | cytosol | 25.0 | 27.07 |
| TraesCS5D01G504500.1 | Wheat | nucleus | 25.0 | 26.47 |
| EER90597 | Sorghum | plastid | 29.86 | 22.63 |
Protein Annotations
| EMBL:ACUP02003394 | EnsemblPlants:KRH51838 | EnsemblPlantsGene:GLYMA_06G031000 | EntrezGene:100819711 | PANTHER:PTHR33872 | PANTHER:PTHR33872:SF2 |
| ProteinID:KRH51838 | ProteinID:KRH51838.1 | UniParc:UPI0002338336 | UniProt:I1K7R0 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr6:-:2430389..2431671
Molecular Weight (calculated)
16116.8 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.625
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLMAGWDS LILDPESATI ERNRSLTKEE IDAYWRAKKE TELEHLRAIS KLSETIQTRK CEDSENSHKS STVTLASIKE SLGMDVDQKS LEQLIKKNGW
101: WTKSNWAFLN EPPVIEAASN EYASQFHVAN LGSTKFNPGD GISA
101: WTKSNWAFLN EPPVIEAASN EYASQFHVAN LGSTKFNPGD GISA
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
101: NYVSQFKVAH IAKIAGS
Arabidopsis Description
DNA polymerase epsilon catalytic subunit A [Source:UniProtKB/TrEMBL;Acc:Q93WK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.